Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq59 167 2e-36 seq991 113 4e-20 seq185 105 6e-18 >seq59 Length=1347070 Score = 167 bits (184), Expect = 2e-36 Identities = 191/257 (74%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 ||||| || || ||||| | ||| ||||||||||||||||||||||| ||||| |||| Sbjct 1330324 GAGGGCAAGATGCACGGCTTCCTGCGCATGTACTGGGCCAAAAAGATCCTCGAATGGAGC 1330383 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 | || || ||||||||||| ||||| | |||| || ||||| | |||||||| ||| Sbjct 1330384 CCCACGCCGGAGCAGGCGCTTGAGTACGCCATTTTACTGAACGACAAGTACAGTCTGGAC 1330443 Query 71837 GGTCGCGATCCTAACGGTTATGTCGGTTGCATGTGGAGCATTTGCGGTCTTCACGATAGA 71896 || |||||||| ||||| ||||| |||||||||||| ||| |||| | ||||||| Sbjct 1330444 GGGCGCGATCCAAACGGCTATGTGGGTTGCATGTGGTCCATCGGCGGCGTCCACGATATG 1330503 Query 71897 AGCTTTTTAGAACGTCAAGTGTTTGGTAAAATTCGCTATATGAATCGTAATGGTTGCGAA 71956 ||| || || | ||||| || ||||| || ||||| | || ||| | Sbjct 1330504 GGCTGGAAGGAGCGGGCCATCTTTGGCAAGATTCGGTACATGAACTACCAGGGCTGCCGA 1330563 Query 71957 CGCAAGTTCAATGTGAA 71973 || |||||| ||||||| Sbjct 1330564 CGAAAGTTCGATGTGAA 1330580 >seq991 Length=691118 Score = 113 bits (124), Expect = 4e-20 Identities = 672/1059 (63%), Gaps = 32/1059 (3%) Strand=Plus/Plus Query 147447 AGATGCTGATTGACCACTTGATACTCGCCCGACAGAACTCTTCGTACGTACAAATTACTA 147506 || || || || ||||| || | ||||| || ||||| | |||| || | ||| | Sbjct 358053 AGGTGGTGGTTAACCACCTGGAATTCGCCGGAGAGAACGCGTCGTGTATAGATATTTGTG 358112 Query 147507 GTAAACGGCTCGAACGACTCGTTGTTACCTAGAATCTGTGCAGTCGTTGCCGTCGGCATG 147566 || |||||||||| || ||||| || || | ||||| ||||| | |||||| |||||| Sbjct 358113 GTGTACGGCTCGAAGGATTCGTTATTGCCCATTATCTGGGCAGTGGATGCCGTTGGCATG 358172 Query 147567 TAAGCAATCAATAATGAATTGCGTAAGCCGTGCATAGCCATTT-CTCGCTTAAGCTCGTC 147625 || | || | || || | | || || | || ||| ||| |||| | | Sbjct 358173 GGGGCGACCAGCAGAGAGTTCCTGACACCATGTTTCTTGATCGACTC-CTTCAGCTTGGC 358231 Query 147626 CCAGTTCCAAAGATCATTCGATTGGTTAATATTCCACAAATCAAACTGTAAAAGTCCACA 147685 ||||| ||| || | ||| | || | | ||||| ||| |||| | || ||| Sbjct 358232 CCAGTCCCAGAGGT---TCGTTGGGACCTTGTCCCACATATCGTACTGAAGAATTCCCTT 358288 Query 147686 ACTTGCAGGGCTTCCATCGTAAGAATCGTATGTTCCGTGCAGTTTAGCTAGTTCGATACT 147745 ||| | || || || ||||| | || || | || | | || ||||| ||| Sbjct 358289 GCTTACGGGACTGCCCTCGTATGTTTCATACGGACCTTCGGCCTGGGCCAGTTCACAACT 358348 Query 147746 TTGACTT--AGTGCACCATAATAAATAGTTTCTGAAATCTTTTTATTTAAATCTCTAGCC 147803 | ||| ||||| |||||||| |||||||| | |||| | |||| | ||| Sbjct 358349 TG--CTTCCAGTGCGCCATAATAGATAGTTTCAAAGATCTGCTGGTTTAGGAGACCTGCC 358406 Query 147804 TCTTGGCTGTCGTA-GGGCATATC--CAAAATGGCGAACGTATCCGCAAGTCCTTGAATA 147860 || | ||| ||||| ||| || || || ||| || | ||| |||| || ||||| Sbjct 358407 TCCTCGCTTTCGTAAGGGAATCTCATCAGAATC---AAGGCATCAGCAAAACCCTGAATG 358463 Query 147861 CCGATACCGATGGGTCGGTGTCTGAAATTCGATGCTTGAGCGCTAGCCAACGGATAAAAA 147920 || || || ||||| || || || ||||| ||| | || | || |||||| || Sbjct 358464 CCAATGCCAATGGGGCGATGCCTCAAATTTGATTTCCGGGCCTCTGGCAGGGGATAATAA 358523 Query 147921 TTCAAGTCGATAATTTTATTGAGATTATTGGTAACCACTCT---AGATACATTGTAGAGC 147977 || | ||| ||||| ||||| ||||| || | ||||| | || || | | || Sbjct 358524 TTGATGTCAATAATCTTATTCAGATTCTTAG---CCACTGTCTTAGTGACCTCCTTCAGT 358580 Query 147978 GACTTAAAGTCGAAGCTTTTAAACTGTTTATTGGCAAAATTATTTACGGCAATCGAGGCC 148037 |||||||||| | | || || | | || | || | || || || ||| Sbjct 358581 TTCTTAAAGTCGTACGTCTT---CTCAGGGGTCACGAACATGTTGAGAGCGATGGATGCC 358637 Query 148038 AAGTTACACACGGCCGTTTC-TCGATTGTCGCTATATTGAACGATTTCGGCACACAGATT 148096 | ||| || ||||| |||| ||| | || ||| | ||||||||| | || ||||| Sbjct 358638 AGGTTGCAAACGGCGATTTCGTCGGGCGACGA-ATACTCAACGATTTCTGTGCAAAGATT 358696 Query 148097 GCTGTTTCGAATCACTCCCTCGtttttttGATTATTTTTATTGTTAACGTG-ATCTTTAA 148155 ||| || || | || | ||||| | || |||| | || ||| || | Sbjct 358697 ACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTG-CATGCATCCTTGA 358755 Query 148156 ACATCATGTATGGAGCTCCGGTCTCGACTTGAGTCTCAATAATTTTT--CTATGAAGATC 148213 ||| ||| || ||| || ||||| || || | |||||| || | | || | Sbjct 358756 ACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTCAATGATGGCGAACCACAGGGA-C 358814 Query 148214 TAAAGCCGAAATTTGTTTTTTAAACTTGCCTTCGGCCTCGTAATTTTCGTAAAGGTCCTC 148273 | | ||| || || || |||||||||||||| || ||| | | || Sbjct 358815 TGA-GCCTTAACCGTCCGATTGGCTTTTCCTTCGGCCTCGTATTTGAGGTACAATTGGTC 358873 Query 148274 GAATTCTTGGCCATAGCAATCGTTTAAACCGGGACACTCGTCGGGGCACATCAATGACCA 148333 ||||| | ||| | ||| | | |||||||||| || |||||||||| ||||| Sbjct 358874 AAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACACTTGTGCGGGCACATCAGCGACCA 358933 Query 148334 TTTCCCTCCTGTCTTTACCCTCTTCATAAACAGATCAGGTGTCCACATGGCAAAAAGAAG 148393 ||| | || || || | ||||||||| ||||||||| |||| | |||| ||| | Sbjct 358934 GTTCTCATTTGCCTCAACGCGCTTCATAAAGAGATCAGGTATCCAGAGGGCATAAAATAA 358993 Query 148394 ATCGCGAGCCTTCATATCCTCGGCACCCATATTGCGCTTTAGATCCaaaaaagtaaaaaC 148453 ||||||||| | || || ||| | || ||| || ||||| || |||||| Sbjct 358994 ATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCTTCTTCAGTTCCAAGAATTCAAAAAC 359053 Query 148454 GTCTGCGTGCCAAGGCTCGATGTATACGGTCATGGCGCC 148492 || | ||||| ||||| | ||| | || | |||||| Sbjct 359054 ATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGGCGCC 359092 >seq185 Length=662383 Score = 105 bits (116), Expect = 6e-18 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 119640 CGCTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTA 119699 |||| |||||||||||| || |||||||| || |||||||| || || || || | Sbjct 113991 CGCTGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATC 114050 Query 119700 TTCATAAACTCGAAAGGATTTGCAGTGTTG-AAATGCTTGTCGTA-GCCCAACTCGAACA 119757 | ||| || | ||| || || |||||| | || || || | ||||||||||| | Sbjct 114051 TCCATGAAGTTGAACGGGTTCTTGGTGTTGTAGAT--TTTTCCAACGCCCAACTCGACGA 114108 Query 119758 ACAGTCGATCTGCCACAAACTCGATGTATTCGCACA-TGGATTGCGAATTCATGCCCAAC 119816 ||| ||||| ||||||||||| ||||| | ||| | | | || | |||||||| | | Sbjct 114109 GCAGGCGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGC-AGTTCATGCCGATC 114167 Query 119817 ATAGCGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTC 119869 | | || || | |||| ||| ||||| |||| ||||||||| || || || Sbjct 114168 AGATTCACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTC 114220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478654286672320