Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq991 351 3e-91 >seq991 Length=691118 Score = 351 bits (388), Expect = 3e-91 Identities = 1142/1750 (65%), Gaps = 49/1750 (3%) Strand=Plus/Minus Query 363433 AATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCAT 363492 ||||| | ||||| || || ||||| |||||| ||||||| || || ||||| |||||| Sbjct 359497 AATGGCAAGATTGTCGAGCGGCCGCAACATATGCTAATGCGCGTGGCGATTGGAATCCAT 359438 Query 363493 TGCCCGGATGTTGATGCCGCGATTGAAACATATAA---GCT-TCTAAGTGCTCGTGTATT 363548 | ||| | |||||||| |||| || || || ||| || || ||| | || Sbjct 359437 GGTGAAGATATCGATGCCGCTGTTGAGACCTACAATTTGCTGTCAGAGCGCT----TCTT 359382 Query 363549 CACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTG 363608 ||| |||||| | || || ||| | |||| ||| || || | || || || Sbjct 359381 CACACACGCCTCACCCACTCTGTTCGCCGCTGCCACTAACCGACCGCAACTCTCGTCCTG 359322 Query 363609 CTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTG 363668 ||| ||||| | |||| |||||| ||||| ||||| || | | | | | || Sbjct 359321 CTTCCTTCTGACTATGACATCCGATTCGATCGAAGGTATTTTCAAGTCGGTGGAACACTG 359262 Query 363669 TGCTCTTATTTCCAAGAATGCAGGCGGAATTGG--TGTATCGATCCACAATGTTCGTGCA 363726 ||| | ||||||||| || ||||| ||||| || || |||| | ||||| Sbjct 359261 TGCCATGATTTCCAAGTCGGCGGGCGGCATTGGCCTGAATG--TCCATTGCATCCGTGCC 359204 Query 363727 CAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 || || | || | ||||| | |||| ||| ||||| || ||||||||||| || Sbjct 359203 AAGGGCACCTCGATATGTGGCACGAATGGGAC-CTCCAATGGCCTCGTTCCCATGCTGCG 359145 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 || || ||||| ||| | ||||| || |||||||| || |||||| || || || Sbjct 359144 AGTCTTCAACAATGTAGCGCGTTACGTGGATCAGGGTGGCGGCAAGCGCCCTGGCGCCTT 359085 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 ||| || || | ||||| ||| ||||| ||||||| || | || || ||| || Sbjct 359084 TGCCATCTACTTGGAGCCCTGGCATTCCGATGTTTTTGAATTCTTGGAACTGAAGAAGAA 359025 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 ||| || || || || ||||| || ||| | || ||||| || ||| | |||| | Sbjct 359024 CACCGGTAAGGAAGAGAATCGTGCTCGCGATTTATTTTATGCCCTCTGGATACCTGATCT 358965 Query 363966 TTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCC 364025 |||||||||||||| |||||| | |||| ||||| || | ||||| ||| | ||||| Sbjct 358964 CTTTATGAAGCGCGTTGAGGCAAATGAGAACTGGTCGCTGATGTGCCCGCACAAGTGTCC 358905 Query 364026 AGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGA 364085 || || ||||| ||||| ||||| | || | ||| || || || | || Sbjct 358904 CGGCCTGCAGGATGTTTGGGGCGACGAATTTGACCAATTGTACCTCAAATACGAGGCCGA 358845 Query 364086 GGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCA 364145 ||||| || | ||| || || ||| || ||||| |||||||| || |||| Sbjct 358844 AGGAAAAGCCAATCGGACGGTTAAGGCTCAGTCCCTGTGGTTCGCCATCATTGAGGCGCA 358785 Query 364146 GATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCA 364205 | | ||||| || | || |||||| ||| ||| ||| | |||||| | ||| ||| || Sbjct 358784 GGTGGAGACTGGCAATCCTTATATGCTGTTCAAGGATGCATGCAACAGGAAGAGCAATCA 358725 Query 364206 GCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGC 364265 |||| | |||| || || || || || || || || || || |||| || | | Sbjct 358724 GCAGAATGTTGGCACCATCAAGTGCAGTAATCTTTGCACAGAAATCGTTGAGTATTCGTC 358665 Query 364266 TCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA---- 364321 |||||||| | ||||| || ||||| || || ||||| || ||| || | Sbjct 358664 GCCCGACGAAATCGCCGTTTGCAACCTGGCATCCATCGCTCTCAACATGTTCGTGACCCC 358605 Query 364322 -AAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAAT 364380 ||| | || | ||| || | || | || || || | | || ||| Sbjct 358604 TGAGAAG--ACGTACGACTTTAAGAAACTGAAGGAGGTCACTAAGACAGTGGCTAAGAAT 358547 Query 364381 CTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATG 364440 || | ||| |||| |||| ||||||||||| | || || ||| | || ||| || Sbjct 358546 CTGAATAAGATTATTGACATCAATTATTATCCCCTGCCAGAGGCCCGGAAATCAAATTTG 358487 Query 364441 CGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCTCAAG 364500 | |||||||| ||||| |||| | ||||| | ||||| | || || || | || Sbjct 358486 AGGCATCGCCCCATTGGCATTGGCATTCAGGGTTTTGCTGATGCCTTGATTCTGAT-GAG 358428 Query 364501 ATGGCATT-TGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAAACAATGTA 364559 || | || || || || || | ||||| || ||||||||||||| || || Sbjct 358427 ATTCCCTTACGAAAGCGAGGAGGCAGGTCTCCTAAACCAGCAGATCTTTGAAACTATCTA 358368 Query 364560 TTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTACTCTACTTA 364619 || || |||| || || ||||| |||| | || | || ||| || || Sbjct 358367 TTATGGCGCACTGGAAGCAAGTTGTGAACTGGCCCAGGCCGAAGGTCCGTATGAAACATA 358308 Query 364620 TGAGGG--GTCCCCTCTTTCGC-AGGGAAAATTCCAGTTTGATCTATGG---AATGTCAC 364673 ||||| |||| | | || |||||| | |||| ||| | ||| || ||| Sbjct 358307 CGAGGGCAGTCC---CGTAAGCAAGGGAATTCTTCAGTACGATATGTGGGACAAGGTC-- 358253 Query 364674 GCCATCTGTCCGATGGAACTGGGATACGCT--ACGTTCCAACGTTAAGAAGCATGGTACT 364731 ||| | || ||| |||||| | ||| | | | | | ||||| |||||| Sbjct 358252 -CCAACGAACCTCTGGGACTGGGCCAAGCTGAAGGAGTCGA--TCAAGAAACATGGTGTC 358196 Query 364732 CGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAAAC 364791 | ||||| || | || |||||||| ||||| || ||||| ||||| | || || Sbjct 358195 AGGAACTCTCTGCTGGTCGCCCCCATGCCAACGGCATCCACTGCCCAGATAATGGGCAAT 358136 Query 364792 AACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAGAA 364851 ||||| | |||||| |||| || | ||| | ||| |||| || ||||| ||||| ||| Sbjct 358135 AACGAATCCTTCGAGCCGTACACCACAAATATCTATACACGACGCGTTCTCTCCGGCGAA 358076 Query 364852 TTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGGCTGTGGGGTGAC 364911 || | ||| ||||| | |||| | | |||||| | || | | |||||| ||| Sbjct 358075 TTCCAGGTGGTTAACCACCACCTGTTGAGGGATCTGACGGAGCTTGACTTGTGGGATGAT 358016 Query 364912 AGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATTCCAGGATTTCCA 364971 ||||||||| | || || || ||| || | ||||| | || ||| ||| Sbjct 358015 GATATGAAGAACCAGATAATTTCCAGCCGTGGCTCAATTCAGAATA-TCGAGGCCATCCC 357957 Query 364972 GAAG-ATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTC--TCATT 365028 || || || | | ||||| || || ||||| || ||| | || || |||| Sbjct 357956 CCAGCATGTGCGCGATCTGTACAAGACGGTGTGGGAGATCTCC--GTCAAGTCCACCATT 357899 Query 365029 GATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATG 365088 | ||||| || ||||| ||||| || ||| |||||| || ||||| ||| ||||||| Sbjct 357898 AAAATGGCTGCGGATCGTGGTGCATTCATCGATCAGAGTCAATCGTTCAAC--ATTCATG 357841 Query 365089 --ACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTC 365146 | |||| | || | |||||| || ||||| ||||| ||| |||||| | || | Sbjct 357840 TTGCCGAGCCCAACTATGGCAAGCTGACGTCCATACATTTTTACTCGTGGAAGGCTGGCC 357781 Query 365147 TTAAGACAGG 365156 |||| || || Sbjct 357780 TTAAAACCGG 357771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303330955860392