Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq991 91.5 1e-13 seq98 86.0 5e-12 seq1117 84.2 2e-11 >seq991 Length=691118 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | |||||| |||||| ||||||||||| || ||||| ||||| Sbjct 450561 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 450620 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | ||||| | | |||||||| || ||||||| | | | | || || |||||| Sbjct 450621 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 450680 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||||| || || || || | ||||| ||| Sbjct 450681 ATTCAGAAGGAGTCCACCTTGCATTTGGTG 450710 >seq98 Length=20832 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 23989 AAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCA 24048 ||||||| | ||||| ||||| || |||||||| | || ||| | || || ||| | Sbjct 12987 AAATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCTT 12928 Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 ||||||||| || | || || || || ||||| || || || || || || | Sbjct 12927 CCGACACCATTGAAAATGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCCCCAGACC 12868 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 | ||| | || |||| || ||||||||| || || |||| | | | | ||||||| Sbjct 12867 AGCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGACGCACCCTGTCGGATTATA 12808 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 |||| || || |||||||| | || || ||| | | || | |||||| Sbjct 12807 ACATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTGCGCGGAGGA 12758 >seq1117 Length=387944 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | ||||| || | || ||| | || || ||| | Sbjct 174829 AATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 174770 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || ||||| ||||| || || || ||||| ||||| Sbjct 174769 CGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGATCA 174710 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || ||| ||||| || || |||| | | | | | |||||||| Sbjct 174709 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGATTATAA 174650 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||| || || |||||||| | || || ||| Sbjct 174649 CATCCAGAAGGAATCTACCCTGCACTTGGTG 174619 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | ||||| || | ||||| | || || ||| | Sbjct 175285 AATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACCATTACTTTGGAGGTGGAGCCTTC 175226 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||||||| | || || ||||| ||||| || || || ||||| ||||| Sbjct 175225 CGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGATCA 175166 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAAC-GTCAGCGATTAT 24167 ||| | || |||| | |||||||||||| || ||| ||| | | ||| ||| || Sbjct 175165 GCAGCGTCTCATTTTTGCCGGCAAGCAACTGGAGGATGGACGTACTCTGTC--CGACTAC 175108 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||||| || || || || ||||| | ||| Sbjct 175107 AACATTCAGAAGGAGTCGACCCTTCATCTTGTG 175075 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429928894770180