Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq991 385 6e-102 seq185 158 2e-33 seq202 82.4 1e-10 >seq991 Length=691118 Score = 385 bits (426), Expect = 6e-102 Identities = 1226/1877 (65%), Gaps = 42/1877 (2%) Strand=Plus/Plus Query 61850 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 61908 ||||| || |||| | || | || || ||||| || |||||||||||||| ||||| || Sbjct 357723 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAGTACATTCCGGTTTTAAG 357781 Query 61909 ACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 61967 || || || ||| ||||||||| || ||| || ||| ||| | || || || | Sbjct 357782 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCATAGTTGGGCTCGGCAA 357840 Query 61968 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62027 ||| || || | |||||||| ||||||||||| || || | || ||||||||||| | Sbjct 357841 CATGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 357900 Query 62028 TAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGA 62086 | | | ||| | || ||||| | || || || | |||| | || ||| Sbjct 357901 TGGTGGACTTGACGGAGATCTCCCACACCGTCTTGTACAGATCGCGCACATGCTGGGGGA 357960 Query 62087 AGGTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 62144 || | |||||||||| || |||| | || ||| ||||| || ||||||| Sbjct 357961 TGGCCTCGATATTCTGAATTGAGCCACGGCTGGAAATTATCTGGTTCTTCATATCATCAT 358020 Query 62145 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62204 ||| || | ||| || | | | || | || || | ||||| || || ||||| | Sbjct 358021 CCCACAAGTCAAGCTCCGTCAGATCCCTCAACAGGTGGTGGTTAACCACCTGGAATTCGC 358080 Query 62205 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 62264 | || | || | || || || ||||| |||| ||||| || | || || ||||| | Sbjct 358081 CGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGC 358140 Query 62265 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62324 ||| || || ||||| ||||| || ||||| || || |||| | | || || | || Sbjct 358141 CCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACAC 358200 Query 62325 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62384 | | | | |||| || || || |||| | ||| || | || || || Sbjct 358201 CATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAGAGGTTCGTTGGGACCTTGT 358260 Query 62385 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGT-ACGATCCTACATATGTATCGTAT 62443 || ||||| || || || || || ||| | ||||| || || Sbjct 358261 CCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTGCCCT-CGTATGTTTCATAC 358319 Query 62444 GGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCG 62503 || ||||| || || ||||||||||| || || | ||| || ||||| || ||||| Sbjct 358320 GGACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCA 358379 Query 62504 AAGATCTTCTTATTTAG---ATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 62560 ||||||| || ||||| | || || ||| ||| || | || | | | ||| Sbjct 358380 AAGATCTGCTGGTTTAGGAGACCT---GCCTCCTCGCTTTCGTAAGGGAATCTCATCAGA 358436 Query 62561 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62620 || || || || || || || |||| ||||| || || || | ||| ||| ||| || Sbjct 358437 ATCAAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGA- 358495 Query 62621 ATTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT-G 62677 |||| | | ||||| | ||||||||||| || || ||||| ||||| ||||| | | Sbjct 358496 -TTTCCGGGCCTCTGGCAGGGGATAATAATTGATGTCAATAATCTTATTCAGATTCTTAG 358554 Query 62678 ACAATTACTT--TGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCC-CATCTATTA 62732 || | ||| ||||| ||||||||||| ||| || | || | || | | Sbjct 358555 CCACTGTCTTAGTGACC---TCCTTCAGTTTCTTAAAGTCGTACGTCTTCTCAGGGGTCA 358611 Query 62733 CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62792 | |||||||| | || | |||||||| || |||||||| | || | | || || Sbjct 358612 CGAACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAAT 358671 Query 62793 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 62852 | | | || || |||||||||||||| ||||||||||| || | ||| || ||||| | Sbjct 358672 ACTCAACGATTTCTGTGCAAAGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGC 358731 Query 62853 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 62912 |||| |||| || |||||||| | || || | ||| | ||||| || | ||| | | Sbjct 358732 TCTTCCTGTTGCATGCATCCTTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCT 358791 Query 62913 CTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTAT-AGATTTGTATCTCTTTTCTCT 62970 | || || || ||| | |||| ||||||| | | |||| | | || ||| Sbjct 358792 CAATGATGGCGAACCACAGGGACT-GAGCCTTAACCGTCCGATTGGCTTTTC-CTTCGGC 358849 Query 62971 TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACA 63030 |||||| |||||| | || || ||||| |||||||||| | ||| || ||||| Sbjct 358850 CTCGTATTTGAGGTACAATTGGTCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACA 358909 Query 63031 TTCATCCGGACACATCAACGACCACTCTCCGTCAT---CCTTCACTCGTTTCATAAAGAG 63087 | | ||| ||||||| |||||| | || |||| ||| || || ||||||||||| Sbjct 358910 CTTGTGCGGGCACATCAGCGACCAGT-TC--TCATTTGCCTCAACGCGCTTCATAAAGAG 358966 Query 63088 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63147 |||||| ||||| || || ||||| ||| | | | || || || || || || || Sbjct 358967 ATCAGGTATCCAGAGGGCATAAAATAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTT 359026 Query 63148 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63207 ||| || || || | ||| | | || ||| |||||||| || |||||||| ||||| | Sbjct 359027 CTTCTTCAGTTCCAAGAATTCAAAAACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAA 359086 Query 63208 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63267 | ||||| || ||| || |||||||| | ||| | || || || | |||| Sbjct 359087 GGCGCCAGGGCGCTTGCCGCCACCCTGATCCACGTAACGCGCTACATTGTTGAAGACTCG 359146 Query 63268 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGC 63327 || ||| |||| | |||||||| || ||||| || || | || || | || |||| Sbjct 359147 CAGCATGGGAACGAGGCCATTGGAGGTCCCATTCGTGCCACATATCGAGGTGCCCTTGGC 359206 Query 63328 ACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385 ||| || | | ||| || || || || || ||| || || || | || || Sbjct 359207 ACGGATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAAATCATGGCACAG 359264 Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445 ||| | || | | || || || || ||| |||| | || || || ||| Sbjct 359265 TGTTCCACCGACTTGAAAATACCTTCGATCGAATCGGATGTCATAGTCAGAAGGAAGCAG 359324 Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505 || | ||| | || |||| | || || | || || || ||||| || || Sbjct 359325 GACGAGAGTTGCGGTCGGTTAGTGGCAGCGGCGAACAGAGTGGGTGAGGCGTGTGTGAAG 359384 Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565 | || || || | |||||| ||||||| ||| | || ||||| ||| ||| Sbjct 359385 AAGCGCTCTGACAGCAAATTGTAGGTCTCAACAGCGGCATCGATATCTTCACCATGGATT 359444 Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625 || | || || ||||||| ||| || || || | || || |||||| || | || Sbjct 359445 CCAATCGCCACGCGCATTAGCATATGTTGCGGCCGCTCGACAATCTTGCCATTACTCTTA 359504 Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685 | ||| || || ||| | || ||||| |||||||| ||||| |||||| || ||| Sbjct 359505 AGCAAATACGAACGTTCGAGGGTCTTAAAGCCAAAATAATTGTACCCAAAGTCACGATCG 359564 Query 63686 TAAATAATAACCGAGTT 63702 ||||| || |||||| Sbjct 359565 TAAATTATGGACGAGTT 359581 >seq185 Length=662383 Score = 158 bits (174), Expect = 2e-33 Identities = 534/827 (65%), Gaps = 11/827 (1%) Strand=Plus/Plus Query 32373 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 32432 ||||| || ||||| || || ||||| || || || || || | || || | ||| Sbjct 113994 TGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 114053 Query 32433 ATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 32492 ||||| | ||| || || | || || |||||| || ||||| || | || Sbjct 114054 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGG 114113 Query 32493 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 32552 | ||| || ||||| || || || ||| | || || ||||| || || || || Sbjct 114114 CGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTC 114173 Query 32553 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 32612 || || || || | || | || || |||||||| || ||||| || ||| Sbjct 114174 ACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAAT----GAT 114229 Query 32613 CTTACTGTTTCT-TC---ACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 32668 || || | | || || |||| | | || | ||| | ||||||| || || Sbjct 114230 CTCGATGATGCGCTCGCGACGCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAA 114289 Query 32669 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 32728 |||||||| ||||||||||| | || | |||||||| || || || || ||||| Sbjct 114290 GTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCAT 114349 Query 32729 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 32788 ||||| ||||| || ||||| || || || ||||| || ||||| || || || Sbjct 114350 CAGGCCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTC 114409 Query 32789 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATCCACTT 32845 || || ||||| ||||| | | ||||||| | ||| || | | ||||| Sbjct 114410 GACGGCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGGAGGAGATCCAGGA 114469 Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905 | ||||| || || || || || ||||| ||||| || |||||||| || || Sbjct 114470 CAGGGCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGTA 114529 Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965 || | || ||| | || || || |||| | ||| ||||| |||||||| Sbjct 114530 GTCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATG 114589 Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025 | ||| || ||||| || || || || |||||||| | ||||| || ||||| || || Sbjct 114590 GACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTGCACCTC 114649 Query 33026 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33085 || || || || | | || || || || || || || ||| ||||| ||||| Sbjct 114650 CTGACTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAACGC 114709 Query 33086 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33145 || ||||| || |||| |||||| | || || ||| || | | ||| Sbjct 114710 CAGCACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGTTAAATC 114769 Query 33146 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192 || || | |||||| |||||||| |||||||| || ||||| |||| Sbjct 114770 CTTGGACAGATCCACCTCTTCCACGGTCCAAAAGGAGGCCTCGGCCT 114816 >seq202 Length=128089 Score = 82.4 bits (90), Expect = 1e-10 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 61850 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 61908 ||||| || |||| | || | || || ||||| || ||||| |||||||| ||||| || Sbjct 56852 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAATACATTCCGGTTTTAAG 56910 Query 61909 ACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 61967 || || || ||| ||||||||| || ||| || ||| || | || || || | Sbjct 56911 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCTTAGTTGGGCTCGGCAA 56969 Query 61968 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62027 ||| || || | |||||||| |||||||||| || || | || ||||||||||| | Sbjct 56970 CATGAATGTTGAACGATTGACTCCGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 57029 Query 62028 T 62028 | Sbjct 57030 T 57030 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633621259937600