Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq991 385 6e-102
seq185 158 2e-33
seq202 82.4 1e-10
>seq991
Length=691118
Score = 385 bits (426), Expect = 6e-102
Identities = 1226/1877 (65%), Gaps = 42/1877 (2%)
Strand=Plus/Plus
Query 61850 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 61908
||||| || |||| | || | || || ||||| || |||||||||||||| ||||| ||
Sbjct 357723 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAGTACATTCCGGTTTTAAG 357781
Query 61909 ACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 61967
|| || || ||| ||||||||| || ||| || ||| ||| | || || || |
Sbjct 357782 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCATAGTTGGGCTCGGCAA 357840
Query 61968 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62027
||| || || | |||||||| ||||||||||| || || | || ||||||||||| |
Sbjct 357841 CATGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 357900
Query 62028 TAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATATCTTCTGGA 62086
| | | ||| | || ||||| | || || || | |||| | || |||
Sbjct 357901 TGGTGGACTTGACGGAGATCTCCCACACCGTCTTGTACAGATCGCGCACATGCTGGGGGA 357960
Query 62087 AGGTTTG--TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCAT 62144
|| | |||||||||| || |||| | || ||| ||||| || |||||||
Sbjct 357961 TGGCCTCGATATTCTGAATTGAGCCACGGCTGGAAATTATCTGGTTCTTCATATCATCAT 358020
Query 62145 TCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTC 62204
||| || | ||| || | | | || | || || | ||||| || || ||||| |
Sbjct 358021 CCCACAAGTCAAGCTCCGTCAGATCCCTCAACAGGTGGTGGTTAACCACCTGGAATTCGC 358080
Query 62205 CAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTC 62264
| || | || | || || || ||||| |||| ||||| || | || || ||||| |
Sbjct 358081 CGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGC 358140
Query 62265 CCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGAC 62324
||| || || ||||| ||||| || ||||| || || |||| | | || || | ||
Sbjct 358141 CCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACAC 358200
Query 62325 CGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNN 62384
| | | | |||| || || || |||| | ||| || | || || ||
Sbjct 358201 CATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAGAGGTTCGTTGGGACCTTGT 358260
Query 62385 NNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGT-ACGATCCTACATATGTATCGTAT 62443
|| ||||| || || || || || ||| | ||||| || ||
Sbjct 358261 CCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTGCCCT-CGTATGTTTCATAC 358319
Query 62444 GGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCG 62503
|| ||||| || || ||||||||||| || || | ||| || ||||| || |||||
Sbjct 358320 GGACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCA 358379
Query 62504 AAGATCTTCTTATTTAG---ATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGA 62560
||||||| || ||||| | || || ||| ||| || | || | | | |||
Sbjct 358380 AAGATCTGCTGGTTTAGGAGACCT---GCCTCCTCGCTTTCGTAAGGGAATCTCATCAGA 358436
Query 62561 ATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAG 62620
|| || || || || || || |||| ||||| || || || | ||| ||| ||| ||
Sbjct 358437 ATCAAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGA- 358495
Query 62621 ATTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCT-G 62677
|||| | | ||||| | ||||||||||| || || ||||| ||||| ||||| | |
Sbjct 358496 -TTTCCGGGCCTCTGGCAGGGGATAATAATTGATGTCAATAATCTTATTCAGATTCTTAG 358554
Query 62678 ACAATTACTT--TGACCACATCCTTCAGTTTGAGAAAATCAAA--TCGCC-CATCTATTA 62732
|| | ||| ||||| ||||||||||| ||| || | || | || | |
Sbjct 358555 CCACTGTCTTAGTGACC---TCCTTCAGTTTCTTAAAGTCGTACGTCTTCTCAGGGGTCA 358611
Query 62733 CAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 62792
| |||||||| | || | |||||||| || |||||||| | || | | || ||
Sbjct 358612 CGAACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAAT 358671
Query 62793 ATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTAC 62852
| | | || || |||||||||||||| ||||||||||| || | ||| || ||||| |
Sbjct 358672 ACTCAACGATTTCTGTGCAAAGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGC 358731
Query 62853 TCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATT 62912
|||| |||| || |||||||| | || || | ||| | ||||| || | ||| | |
Sbjct 358732 TCTTCCTGTTGCATGCATCCTTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCT 358791
Query 62913 CTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTAT-AGATTTGTATCTCTTTTCTCT 62970
| || || || ||| | |||| ||||||| | | |||| | | || |||
Sbjct 358792 CAATGATGGCGAACCACAGGGACT-GAGCCTTAACCGTCCGATTGGCTTTTC-CTTCGGC 358849
Query 62971 TTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACA 63030
|||||| |||||| | || || ||||| |||||||||| | ||| || |||||
Sbjct 358850 CTCGTATTTGAGGTACAATTGGTCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACA 358909
Query 63031 TTCATCCGGACACATCAACGACCACTCTCCGTCAT---CCTTCACTCGTTTCATAAAGAG 63087
| | ||| ||||||| |||||| | || |||| ||| || || |||||||||||
Sbjct 358910 CTTGTGCGGGCACATCAGCGACCAGT-TC--TCATTTGCCTCAACGCGCTTCATAAAGAG 358966
Query 63088 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATT 63147
|||||| ||||| || || ||||| ||| | | | || || || || || || ||
Sbjct 358967 ATCAGGTATCCAGAGGGCATAAAATAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTT 359026
Query 63148 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63207
||| || || || | ||| | | || ||| |||||||| || |||||||| ||||| |
Sbjct 359027 CTTCTTCAGTTCCAAGAATTCAAAAACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAA 359086
Query 63208 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63267
| ||||| || ||| || |||||||| | ||| | || || || | ||||
Sbjct 359087 GGCGCCAGGGCGCTTGCCGCCACCCTGATCCACGTAACGCGCTACATTGTTGAAGACTCG 359146
Query 63268 CAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGC 63327
|| ||| |||| | |||||||| || ||||| || || | || || | || ||||
Sbjct 359147 CAGCATGGGAACGAGGCCATTGGAGGTCCCATTCGTGCCACATATCGAGGTGCCCTTGGC 359206
Query 63328 ACGAAT--ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCAT 63385
||| || | | ||| || || || || || ||| || || || | || ||
Sbjct 359207 ACGGATGCAATGGACATT--CAGGCCAATGCCGCCCGCCGACTTGGAAATCATGGCACAG 359264
Query 63386 CGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAG 63445
||| | || | | || || || || ||| |||| | || || || |||
Sbjct 359265 TGTTCCACCGACTTGAAAATACCTTCGATCGAATCGGATGTCATAGTCAGAAGGAAGCAG 359324
Query 63446 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAAC 63505
|| | ||| | || |||| | || || | || || || ||||| || ||
Sbjct 359325 GACGAGAGTTGCGGTCGGTTAGTGGCAGCGGCGAACAGAGTGGGTGAGGCGTGTGTGAAG 359384
Query 63506 CATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATT 63565
| || || || | |||||| ||||||| ||| | || ||||| ||| |||
Sbjct 359385 AAGCGCTCTGACAGCAAATTGTAGGTCTCAACAGCGGCATCGATATCTTCACCATGGATT 359444
Query 63566 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTC 63625
|| | || || ||||||| ||| || || || | || || |||||| || | ||
Sbjct 359445 CCAATCGCCACGCGCATTAGCATATGTTGCGGCCGCTCGACAATCTTGCCATTACTCTTA 359504
Query 63626 AACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCG 63685
| ||| || || ||| | || ||||| |||||||| ||||| |||||| || |||
Sbjct 359505 AGCAAATACGAACGTTCGAGGGTCTTAAAGCCAAAATAATTGTACCCAAAGTCACGATCG 359564
Query 63686 TAAATAATAACCGAGTT 63702
||||| || ||||||
Sbjct 359565 TAAATTATGGACGAGTT 359581
>seq185
Length=662383
Score = 158 bits (174), Expect = 2e-33
Identities = 534/827 (65%), Gaps = 11/827 (1%)
Strand=Plus/Plus
Query 32373 TGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCC 32432
||||| || ||||| || || ||||| || || || || || | || || | |||
Sbjct 113994 TGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 114053
Query 32433 ATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAAT 32492
||||| | ||| || || | || || |||||| || ||||| || | ||
Sbjct 114054 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGG 114113
Query 32493 CTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 32552
| ||| || ||||| || || || ||| | || || ||||| || || || ||
Sbjct 114114 CGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTC 114173
Query 32553 ACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGAT 32612
|| || || || | || | || || |||||||| || ||||| || |||
Sbjct 114174 ACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAAT----GAT 114229
Query 32613 CTTACTGTTTCT-TC---ACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAA 32668
|| || | | || || |||| | | || | ||| | ||||||| || ||
Sbjct 114230 CTCGATGATGCGCTCGCGACGCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAA 114289
Query 32669 ATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCAT 32728
|||||||| ||||||||||| | || | |||||||| || || || || |||||
Sbjct 114290 GTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCAT 114349
Query 32729 TAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTC 32788
||||| ||||| || ||||| || || || ||||| || ||||| || || ||
Sbjct 114350 CAGGCCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTC 114409
Query 32789 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC--GCTGTCATG-TATCCACTT 32845
|| || ||||| ||||| | | ||||||| | ||| || | | |||||
Sbjct 114410 GACGGCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGGAGGAGATCCAGGA 114469
Query 32846 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 32905
| ||||| || || || || || ||||| ||||| || |||||||| || ||
Sbjct 114470 CAGGGCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGTA 114529
Query 32906 GtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG 32965
|| | || ||| | || || || |||| | ||| ||||| ||||||||
Sbjct 114530 GTCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATG 114589
Query 32966 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTC 33025
| ||| || ||||| || || || || |||||||| | ||||| || ||||| || ||
Sbjct 114590 GACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTGCACCTC 114649
Query 33026 TGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33085
|| || || || | | || || || || || || || ||| ||||| |||||
Sbjct 114650 CTGACTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAACGC 114709
Query 33086 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 33145
|| ||||| || |||| |||||| | || || ||| || | | |||
Sbjct 114710 CAGCACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGTTAAATC 114769
Query 33146 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 33192
|| || | |||||| |||||||| |||||||| || ||||| ||||
Sbjct 114770 CTTGGACAGATCCACCTCTTCCACGGTCCAAAAGGAGGCCTCGGCCT 114816
>seq202
Length=128089
Score = 82.4 bits (90), Expect = 1e-10
Identities = 130/181 (72%), Gaps = 4/181 (2%)
Strand=Plus/Plus
Query 61850 GTGAATTGAATGG-GAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAG 61908
||||| || |||| | || | || || ||||| || ||||| |||||||| ||||| ||
Sbjct 56852 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAATACATTCCGGTTTTAAG 56910
Query 61909 ACCGAGACT-CCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTA 61967
|| || || ||| ||||||||| || ||| || ||| || | || || || |
Sbjct 56911 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCTTAGTTGGGCTCGGCAA 56969
Query 61968 TATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTA 62027
||| || || | |||||||| |||||||||| || || | || ||||||||||| |
Sbjct 56970 CATGAATGTTGAACGATTGACTCCGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 57029
Query 62028 T 62028
|
Sbjct 57030 T 57030
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633621259937600
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