Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq185 266 4e-66 seq85 122 1e-22 seq58 113 5e-20 >seq185 Length=662383 Score = 266 bits (294), Expect = 4e-66 Identities = 558/825 (68%), Gaps = 10/825 (1%) Strand=Plus/Plus Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 ||||| || || || || || ||||| || || ||||| || |||| || ||| | | Sbjct 113994 TGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 114053 Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAATAAT 92923 | | ||| || ||||||| ||| || ||| || || ||||||| | | Sbjct 114054 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGG 114113 Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 | |||||| ||||| || |||||||| ||||| | || || ||||| || | ||| Sbjct 114114 CGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTC 114173 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || || || || ||||||||||| || | || || | || || || | ||| || Sbjct 114174 ACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCTCG 114233 Query 93044 ATTA--CTCTA-CTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCAC-GCAAA 93099 || | | || | | ||| | | | || | || | | |||| | |||| ||||| Sbjct 114234 ATGATGCGCTCGCGACGCGGTCGCT---GCACCAGATGCTGGAACATCA-GCACCGCAAA 114289 Query 93100 GTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAA 93159 |||| || | ||| ||||| || || || | ||| ||| ||| || | || || | Sbjct 114290 GTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCAT 114349 Query 93160 CAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTC 93219 ||| || || ||||| ||||| || || || ||||| || || || || || || || Sbjct 114350 CAGGCCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTC 114409 Query 93220 CACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTT 93279 ||||| |||||||| | || || || |||| || || || || | |||||| Sbjct 114410 GACGGCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGGAGGAGATCCAGGA 114469 Query 93280 TAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTA 93339 | ||||| || ||||| ||| | || | || ||||| || ||||| ||||| Sbjct 114470 CAGGGCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGTA 114529 Query 93340 ATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATG 93399 || |||| | || ||| || ||||| || ||||| | || | ||||| || ||||| Sbjct 114530 GTCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATG 114589 Query 93400 GACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTC 93459 ||| |||||||| || || ||||| || ||||| || | || || ||||||||||| || Sbjct 114590 GACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTGCACCTC 114649 Query 93460 TTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGC 93519 ||| || | ||| || || || || ||||| || |||||||| || ||||| || || Sbjct 114650 CTGACTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAACGC 114709 Query 93520 CAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATC 93579 || | ||| || ||||| || ||||| ||||| || ||| |||| || ||| Sbjct 114710 CAGCACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGTTAAATC 114769 Query 93580 TTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || ||||| || ||||| || |||||||| || || || || Sbjct 114770 CTTGGACAGATCCACCTCTTCCACGGTCCAAAAGGAGGCCTCGGC 114814 >seq85 Length=1945565 Score = 122 bits (134), Expect = 1e-22 Identities = 82/91 (90%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 |||||||||||||||| |||||||||||||||||||||| |||||||| | | |||| Sbjct 1844058 AGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGAGC 1843999 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTAT 126353 ||||||||||||||||||||||||||| ||| Sbjct 1843998 GTGGGTTCGAACCCCACACCTGACAAAGTAT 1843968 >seq58 Length=7300740 Score = 113 bits (124), Expect = 5e-20 Identities = 90/105 (86%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 126247 TTTTGCGCTTCTATTTACA--GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGA 126304 |||| ||| ||||||||| | ||||||||||||| |||||||||||||||||||||| Sbjct 6368932 TTTTTCGCC-CTATTTACATAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGC 6368990 Query 126305 TCTGGTTCCC--TCGGGAGCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||| | | |||||||||||||||||||||||||| || Sbjct 6368991 TCTGGTTCTCGTGAGAGAGCGTGGGTTCGAACCCCACACCTGGCA 6369035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556851361209440