Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq817 89.7 1e-14 >seq817 Length=4525942 Score = 89.7 bits (98), Expect = 1e-14 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 3334 CCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCG 3393 |||||| || |||||||| | | || |||||| || |||||||||||||| || Sbjct 2293925 CCCATGGCCCGGGTCTTTCCCAAGGTAACCAAATGTACCTTCCACAAATACGGTCCCTCC 2293866 Query 3394 GGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAG 3453 ||| || | || | ||| ||||| ||| | || || ||| | ||||| |||||| Sbjct 2293865 GGCAATGTGCAGAAGTTCGATGGACTGTGCGTGCTGCCCCTGAATATTGTCAATGAGAAG 2293806 Query 3454 ATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||| | ||||| |||||||||||| Sbjct 2293805 ATCTACGTGTTCCTTTGGTTCTGGTTC 2293779 Score = 82.4 bits (90), Expect = 2e-12 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || |||||||| ||| |||| || |||||| | || |||| || |||||| Sbjct 2330332 TGCACCTTCCACAAATATGGTGCTTCTGGATCCCTGCAGAAGCACGACTCCCTTTGCATC 2330391 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCT 3481 || ||| |||| | ||||||||||||| || | ||| | ||||||||||||| Sbjct 2330392 CTGCCGCTGAACATTGTCAACGAGAAGACATATGTGTTCATTTGGTTCTGGTTCT 2330446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479814906000