Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq185 307 2e-78 seq991 291 2e-73 >seq185 Length=662383 Score = 307 bits (340), Expect = 2e-78 Identities = 512/731 (70%), Gaps = 19/731 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 ||||| ||||| |||||||| || ||||| ||||| |||||||||| | | |||| Sbjct 114712 CTGGCGTTCTTTGCCGCCTCCGATGGCATCGTCAACGAGAACCTGGTCGAGCGTTTCAGT 114653 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAAC 42542 | ||||||||| | ||||| ||||||||||| ||||||||||| ||||| |||||| Sbjct 114652 CAGGAGGTGCAGATCACAGAGGCCCGCTGCTTCTATGGCTTCCAGATCGCCATGGAGAAC 114593 Query 42543 GTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCC-CGTCGAGCG 42601 || || || ||| ||||| ||| || |||| ||||||| |||||| | || |||| Sbjct 114592 GTCCATTCGGAGATGTACAGTGTGCTGATCGACACTTACATCCGGGATCCGCATC-AGCG 114534 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 || ||||| || ||||| ||||| ||||| | ||| || || |||||||| Sbjct 114533 GGACTACCTGTTTAATGCCATCGAGACCATGCCGGCGGTGAAGCGCAAAGCTGACTGGGC 114474 Query 42662 GCTCAACTGGATCGAGAGTCC-CGACG-----CAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 || ||||||| ||| | | | |||| || || ||| || | | || || Sbjct 114473 CCTGTCCTGGATC-----TCCTCCAAGTCTGCCAAC-TTTGGAGAGCGGATCATTGCATT 114420 Query 42716 TACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCA 42775 | ||||||||||||||||||||||| ||| ||| ||||| || |||||||| ||| | Sbjct 114419 TGCCGCCGTCGAGGGCATCTTCTTCAGCGGCAGCTTTGCCTCTATTTTCTGGCTGAAGAA 114360 Query 42776 GAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCT 42835 | | |||||| || || |||||||| ||||| |||||| | | |||||||| || Sbjct 114359 GCGCGGCCTGATGCCTGGCCTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCT 114300 Query 42836 GCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAG-G 42894 ||| | |||||||| || ||||| | || || ||| | || || | | Sbjct 114299 GCACTGCGACTTTGCGGTGCTGATGTTCCAG---CATCTGGTGCA-GCGACCGCGTCGCG 114244 Query 42895 AGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGT 42954 |||| || | ||||| || || ||||| || || |||||||| | || | Sbjct 114243 AGCGCATCATCGAGATCATTCGTGACGCTGTGGACATTGAACAGGAGTTCTTGACCGATG 114184 Query 42955 CGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACG 43014 | ||||||||| ||| ||||||||||| |||||| |||| ||||||| ||| | Sbjct 114183 CCCTGCCCGTGAATCTGATCGGCATGAACTGCGACCTAATGTCGCAGTACATTGAGTTTG 114124 Query 43015 TCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCT 43074 | || || | || || | || |||| | | |||||||||| | ||| | Sbjct 114123 TGGCTGATCGCCTGCTCGTCGAGTTGGGCGTTGGAAAAATCTACAACACCAAGAACCCGT 114064 Query 43075 TCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 43134 || |||| ||||||| |||||| |||| ||||||||||||||||| |||||| || | Sbjct 114063 TCAACTTCATGGAGATGATCTCGCTGGACGGCAAGACCAACTTTTTTGAGAAGAAGGTGG 114004 Query 43135 CCGACTACCAG 43145 ||| |||||| Sbjct 114003 GCGAGTACCAG 113993 >seq991 Length=691118 Score = 291 bits (322), Expect = 2e-73 Identities = 1033/1597 (65%), Gaps = 68/1597 (4%) Strand=Plus/Plus Query 243737 ACGCTGAACTGGACGG-GTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCTT 243795 ||| ||||||| | || || || | |||| || || | || |||||||| ||||| || Sbjct 357720 ACGGTGAACTGTATGGCGTTCGCAGCCGGC-TTCGTGCGGAGATAGTACATTCCGGTTTT 357778 Query 243796 GAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTGG 243855 || ||| ||| | || | || |||| ||||||||| ||| || |||| Sbjct 357779 AAGGCCAGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGC-CAT----AG--TTGG 357831 Query 243856 GTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTC 243915 | |||| | | | ||||| || || ||||| |||| ||| | | || || Sbjct 357832 G-----CTCGGCAACATGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGATC 357886 Query 243916 TGCGGCCATGGTGATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTA--GATGG-G 243972 || ||||| | ||| | ||| || ||||| || |||||||||| ||| | | Sbjct 357887 CGCAGCCATTTTAATGGTGGACTTGACGGAGATCTCCCACACCGTCTTGTACAGATCGCG 357946 Query 243973 CTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTG-TGGACGATGAGCT 244031 | | |||| ||||| | ||||| ||||| | ||||| | |||| || | || Sbjct 357947 C---ACATGCTGGGGGATGGCCTCGATATTCTGAATTGAGCCACGGCTGGAA-ATTATCT 358002 Query 244032 GGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTC-CAGCGCCTCGACCAGGTGCCTG 244090 || | ||| | ||| | ||||| | | |||| | ||| || | |||||| | Sbjct 358003 GGTTCTTCATATCATCATCCCACAAGTC-AAGCTCCGTCAGATCCCTCAACAGGTGGTGG 358061 Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 || |||||||| || || || || || ||||| || |||| || || || |||| Sbjct 358062 TTAACCACCTGGAATTCGCCGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGC 358121 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||| | || | ||||||| |||||| || ||| || || |||||||| | ||| Sbjct 358122 TCGAAGGATTCGTTATTGCCCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACC 358181 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCGTTCCAGTCCC 244268 |||||| |||||| || || || ||| ||| || || | |||| | |||||||| Sbjct 358182 AGCAGAGAGTTCCTGACACCATGTTTCTTGATC--GACTCCTTCAGCTTGGCCCAGTCCC 358239 Query 244269 ACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGC 244328 | | | || || ||| | ||||||| || |||| || | ||||||| Sbjct 358240 AGAGGTTCGTTGGGACCTTGT---------CCCACATATCGTACTGAAGAATTCCCTTGC 358290 Query 244329 TGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCT 244388 | ||||| ||||||||||| || || ||||| ||| ||||||||| | ||| || Sbjct 358291 TTACGGGACTGCCCTCGTATGTTTCATACGGACCTTCGGCCTGGGCCAGTTCACAACTTG 358350 Query 244389 CGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGC 244448 | || || ||| | || ||||| || || |||||| || ||| | | | |||| Sbjct 358351 CTTCCAGTGCGCCATAATAGATAGTTTCAAAGATCTGCTGGTTTAGGAGACCTGCCTCCT 358410 Query 244449 CGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508 ||| | | |||| | ||||| || ||| | || || | ||||| | ||| |||| Sbjct 358411 CGCTTTCGTAAGGGAATCTCATCAGAATCAAGGCATCAGCAAAACCCTGAATGCCAATGC 358470 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 | ||||| | || | | || || | ||| || |||| ||| ||| | ||| || Sbjct 358471 CAATGGGGCGATGCCTCAAATTTGATTTCCGGGCCTCTGGCAGGGGATAATAATTGATGT 358530 Query 244569 CGATCACCTTGTTGAGGTT----GCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGA 244624 | || | ||| || || || || || || | ||| | | ||| || | Sbjct 358531 CAATAATCTTATTCAGATTCTTAGCCACTG-TCTTAGTGACCTCCTT---CAGTTTCTTA 358586 Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 ||||||||| | | ||| | | | ||| ||| |||||| |||| | Sbjct 358587 AAGTCGTAC------GTCTTCTCAGGGGT---------CACGAACATGTTGAGAGCGATG 358631 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 ||||||||||| ||||| | || || | | |||| || || || ||||| Sbjct 358632 GATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAATACTCAACGATTTCTGTGCAA 358691 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 || |||||||||||||||||||| | | ||| |||||| ||| |||||| || ||| Sbjct 358692 AGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCATGCATCC 358751 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 ||| | ||||| | || || ||||| | ||| || | | || | | ||| ||| Sbjct 358752 TTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTCAATGATGGCGAACCACAGG 358811 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCC 244924 | |||||| ||||||| || || || || |||||||| | ||||| Sbjct 358812 GACTGAGCCTTAACCGTCCGATTGGCTTTTCCTTCGGCCTCGTATTTGAGGTACAATTGG 358871 Query 244925 TCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTC 244984 || || ||| |||||| || || | |||||||| ||| ||||||||| || | Sbjct 358872 TCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACACTTGTGCGGGCACATCAGCGAC 358931 Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 || | | ||| || | || ||| ||||| || || ||||||||||| | || Sbjct 358932 CAGTTCTCATTTGCCTCAACGCGCTTCATAAAGAGATCAGGTATCCAGAGGGCATAAAAT 358991 Query 245045 AGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAG 245104 | || | | | | ||| ||| || ||||||||| |||| ||||| || ||||| Sbjct 358992 AAATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCTTCTTCAGTTCCAAGAATTCAAAA 359051 Query 245105 ACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCC 245164 || ||| ||||||||||||| ||||| || | |||||| || |||||| ||| ||| Sbjct 359052 ACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGGCGCCAGGGCGCTTGCCGCCACCC 359111 Query 245165 TGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAG 245224 || ||||| | | | | |||||||| ||||| | || || | ||| || ||| Sbjct 359112 TGATCCACGTAACGCGCTACATTGTTGAAGACTCGCAGCATGGGAACGAGGCCATTGGAG 359171 Query 245225 TGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT---- 245280 || || ||||| || ||| ||||||| | | || ||| |||||||| Sbjct 359172 GTCCCATTCGTGCCACATATCGAGGTGCCCTTGGCAC---GGATGC-AATGGACATTCAG 359227 Query 245281 GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAG 245317 ||| | ||||| || |||||| || | ||| ||| Sbjct 359228 GCCAATGCCGCCCGCCGACTTGGAAATCATGGCACAG 359264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944323193450560