Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1170 143 2e-29 >seq1170 Length=5152482 Score = 143 bits (158), Expect = 2e-29 Identities = 346/517 (67%), Gaps = 10/517 (2%) Strand=Plus/Plus Query 20135 GGAAAGGGACGTGGAGTGCGCGTCAGCTGCAGCCGTAGTGGCTCTATATGCGTTTTGTAG 20194 ||||| | || || |||||| ||||||| | ||| || || | ||| || |||| Sbjct 3759048 GGAAACGTGCGCGGCGTGCGCTGCAGCTGCTCCTTTAGCGGGTCCACATGGTTTAGGTAG 3759107 Query 20195 ATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCTAAGACCAGTAACATGAGCA 20254 | || | || |||| || |||| || || |||||| | |||||||| ||||| || Sbjct 3759108 ACATGCGTGTCACCCATGGTATGAACGAAGTCGCCGGGTTTCAGACCAGTCACATGGGCT 3759167 Query 20255 AGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCT 20314 | ||| | || | |||| ||| || ||||| ||||| || |||| ||||| || Sbjct 3759168 ATCATGTGGGTGAGCAGGGCGTAGGAAGCGATGTTGAAAGGTACGCCCAGGCCCATATCA 3759227 Query 20315 CCCGACCTCTGATACAGCTGACAGGAAAGCTCACC---GTCA---GCTACATAAAATTGA 20368 | |||||| |||||||||||||| || || || ||| | || | ||||| Sbjct 3759228 GCGCTCCTCTGGTACAGCTGACAGGACAGTTCGCCACGGTCCTGGGAGACGAAGAATTGC 3759287 Query 20369 CATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACAC 20428 | |||| || ||||| | ||||| | | |||| || ||||| ||| || Sbjct 3759288 GCCAGGCAGTGGCATGGCGGCAATGCCATTTTTGGTATGTCCAGGGGATTCCATGCAGAC 3759347 Query 20429 ATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGT-ACGACAATTG 20487 || || || | || || |||||| |||||||| || | | | ||| ||| || Sbjct 3759348 ATGATAATGCGCCTGTCCGACGGATTGGTTTTTATTGTCTCGATCACCTGACG-CAACTG 3759406 Query 20488 GTCAAACCCCTGGCCTGTATAGTCAGCATC-CGCGTCCACGTACGCCGCCCCAAAGTGCC 20546 ||| | |||||||| | ||||| | | | ||||| |||| | |||||||| |||| Sbjct 3759407 GTCGATGCCCTGGCCGCTGTAGTCGTCGTTGCACGTCCG-GTACTCTGCCCCAAAATGCC 3759465 Query 20547 TCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGCGCCAGGCCGCGCC 20606 |||||| || ||||| || || |||||||| || | | || || | || || Sbjct 3759466 GCCACTGAAAGCCGTATACTGGACCCAAATCGCCAACAGCCCGGTCCGTATGACCAAGCT 3759525 Query 20607 CGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATAT 20643 | ||||||||||||||| || || ||||||||| Sbjct 3759526 TGTCCAGGAACTCCCTGGTGCTGTTCCCGTCCCATAT 3759562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441365318731040