Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq991 197 1e-45 >seq991 Length=691118 Score = 197 bits (218), Expect = 1e-45 Identities = 832/1294 (64%), Gaps = 45/1294 (3%) Strand=Plus/Minus Query 94001 ACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTG 94060 ||||||| | || || || | ||||| || || || | | |||||| | | |||| Sbjct 359265 ACTGTGCCATGATTTCCAAGTCGGCGGGCGGCATTGGCCTGAATGTCCATTGCATCCGTG 359206 Query 94061 CCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCC 94120 ||| ||| ||| || | || || ||||| |||||||| |||||||| || ||||| | Sbjct 359205 CCAAGGGCACCTCGATATGTGGCACGAATGGGACCTCCAATGGCCTCGTTCCCATGCTGC 359146 Query 94121 GGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTT 94180 | ||||||||||| | ||||| |||||||| |||||||| || | | | || | | Sbjct 359145 GAGTCTTCAACAATGTAGCGCGTTACGTGGATCAGGGTGGCGGCAAGCGCCCTGGCGCCT 359086 Query 94181 TCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGA 94240 | || |||| | ||||||||||| | || || | ||| | || ||| |||| Sbjct 359085 TTGCCATCTACTTGGAGCCCTGGCATTCCGATGTTTTTGAATTCTTGGAACTGAAGAAGA 359026 Query 94241 ACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACC 94300 || ||| || || | | | || | || | || || || |||||| | || || | Sbjct 359025 ACACCGGTAAGGAAGAGAATCGTGCTCGCGATTTATTTTATGCCCTCTGGATACCTGATC 358966 Query 94301 TTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTC 94360 | |||||||| ||||| ||| ||| |||| || | || || | | |||| Sbjct 358965 TCTTTATGAAGCGCGTTGAGGCAAATGAGAACTGGTCGCTGATGTGCCCGCACAAGTGTC 358906 Query 94361 CCGGACTGTCCGACGTTTGTGGATCG-CG-TTTTGAAGACTTGTATGCTC-GTTACGAAT 94417 |||| ||| || ||||| || || || ||||| | ||||| ||| ||||| Sbjct 358905 CCGGCCTGCAGGATGTTTGGGG--CGACGAATTTGACCAATTGTA-CCTCAAATACGAGG 358849 Query 94418 CGCAGGGCAAGGCCA---GGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGG 94474 | | || || |||| ||| ||||| | ||| | |||||| ||| | | Sbjct 358848 CCGAAGGAAAAGCCAATCGGACGGTTA---AGGCTCAGTCCCTGTGGTTCGCCATCATTG 358792 Query 94475 ACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGT 94534 | | ||||||||||| || | || || || |||||||||| | |||| ||| Sbjct 358791 AGGCGCAGGTGGAGACTGGCAATCCTTATATGCTGTTCAAGGATGCATGCAACAGGAAGA 358732 Query 94535 CCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGT 94594 ||| |||||| | | || |||||| || ||||| ||||| || || || |||| Sbjct 358731 GCAATCAGCAGAATGTTGGCACCATCAAGTGCAGTAATCTTTGCACAGAAATCGTTGAGT 358672 Query 94595 ATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCG 94654 || | || || ||||| || || || || ||||||| |||||| || || || | | Sbjct 358671 ATTCGTCGCCCGACGAAATCGCCGTTTGCAACCTGGCATCCATC--GCTCTCAACAT--G 358616 Query 94655 TGCGAGATGCCT-ACACGTC-TACTGCTTCGTTCG-ATCTGGAGGAGCTTGTGAACTTCG 94711 | || || ||| | | | | ||| ||| | | | ||| ||||| | ||| | Sbjct 358615 TTCGTGACCCCTGAGAAGACGTACGACTT--TAAGAAACTGAAGGAGGT----CACTAAG 358562 Query 94712 CGGGAAGGATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGG 94771 | ||| ||| ||||| | | | || |||| || | || ||| | || | Sbjct 358561 -----ACAGTGGCTAAGAATCTGAATAAGATTATTGACATCAATTATTATCCCCTGCCAG 358507 Query 94772 AGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGG 94831 |||| ||| ||||| ||| |||||| ||||| ||||| ||| | |||||||| || | Sbjct 358506 AGGCCCGGAAATCAAATTTGAGGCATCGCCCCATTGGCATTGGCATTCAGGGTTTTGCTG 358447 Query 94832 ACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGT---TTGAATT 94888 | || || | ||||| | | || ||||| ||| | ||| ||| | || Sbjct 358446 ATGCCTTGATTCTGATGAGATTCCCTTACGA---AAGCGAGGAGGCAGGTCTCCTAAACC 358390 Query 94889 TGAACATATTCGAAAGCATTTATTACGGGGC-CATGAAACAATCCGTCCACTTGGCCAGA 94947 | | || || |||| || ||||| || || | ||| ||| || ||| | ||| Sbjct 358389 AGCAGATCTTTGAAACTATCTATTATGGCGCACTGGAAGCAAGTTGTGAACTGGCCCA-- 358332 Query 94948 TCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAG 95007 || || || || | ||| | | | || ||| | |||| ||| ||||| Sbjct 358331 --GGCCGAAGGTCCGTATGAAACATACGAGGGCAGTCCCGTAAGCAAGGGAATTCTTCAG 358274 Query 95008 TTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGG--AAGCTCTACGCGCTG 95065 | ||| | |||| | || || || | ||||||| ||||| | | | | Sbjct 358273 TACGATATGTGGGACAAGGTCCCAACGAACCTCTGGGACTGGGCCAAGCTGAAGGAGTCG 358214 Query 95066 ATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCA 95125 | | | ||||| ||||| | ||| | ||||| || ||||||||||| ||||| |||| Sbjct 358213 A--TCAAGAAACATGGTGTCAGGAACTCTCTGCTGGTCGCCCCCATGCCAACGGCATCCA 358156 Query 95126 CGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACA 95185 | || ||||| | ||||| ||||| || ||||| || | |||| | || | || | Sbjct 358155 CTGCCCAGATAATGGGCAATAACGAATCCTTCGAGCCGTACACCACAAATATCTATACAC 358096 Query 95186 GGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGT 95245 | || || ||| |||| ||||||| || | ||| | ||||| | |||| |||||| Sbjct 358095 GACGCGTTCTCTCCGGCGAATTCCAGGTGGTTAACCACCACCTGTTGAGGGATCTGACGG 358036 Query 95246 CTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCA 95279 || | |||||| ||| | | |||||||| Sbjct 358035 AGCTTGACTTGTGGGATGATGATATGAAGAACCA 358002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494714814441760