Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_011335.1
Length=119343
Score E
Sequences producing significant alignments: (Bits) Value
seq41 100 2e-16
seq175 84.2 2e-11
seq1172 82.4 6e-11
>seq41
Length=2292486
Score = 100 bits (110), Expect = 2e-16
Identities = 163/235 (69%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414
|||||||| |||||||| ||||| | ||||| ||||||||||||| | ||| | |
Sbjct 1697297 ACGGCCGGAGTCCATCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGACGCCGCTGCGC 1697238
Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474
| ||||| ||| ||| ||| |||| ||||||| |||| | ||||| |
Sbjct 1697237 ATCTTCCTCATGCTGTGCCAGTCGCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGT 1697178
Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534
|| || | || |||||||| | | | ||||| ||||| || |||||| || |
Sbjct 1697177 GACCATCGTGTGCACCACAAATTCACGGACACACACGCCGATCCCCACAACTCCCGTCGC 1697118
Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589
|| |||| ||| | ||| |||||||||| ||| | ||| ||||||| ||||
Sbjct 1697117 GGCTTCTTCTTCGCCCACATGGGATGGCTGATGTGCAAGAAGCACCCCGATGTGA 1697063
Score = 86.0 bits (94), Expect = 5e-12
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 108889 GGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTG 108948
|| |||||||||||||||||||||||||| ||||||| ||||||||||| |||||| ||
Sbjct 1696699 GGTGAGGGATGGCACAACTACCACCACGTCTTCCCCTGGGACTACAAGGCAGCCGAGCTG 1696640
Query 108949 GG 108950
||
Sbjct 1696639 GG 1696638
>seq175
Length=1789090
Score = 84.2 bits (92), Expect = 2e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525
||||||| ||||||| | | |||||||| |||||||| ||| ||||||||||||||
Sbjct 781492 TGGGTGCGCGATCACCGAATGCACCACAAATACTCTGAAACGGATGCCGACCCACACAAT 781551
Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585
| |||||| |||| | ||| ||| | || ||||| || ||| ||| | |||||
Sbjct 781552 ACGTCCAGGGGTTTCTTCTACTCCCACATAGGCTGGCTGCTGGTGAAGAAGCATCCCGAT 781611
Query 108586 GTGA 108589
||||
Sbjct 781612 GTGA 781615
>seq1172
Length=6101896
Score = 82.4 bits (90), Expect = 6e-11
Identities = 75/94 (80%), Gaps = 3/94 (3%)
Strand=Plus/Minus
Query 108879 GTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGC 108938
|||||| | || ||||| ||||| ||||| |||||||| ||||||| |||||||||||
Sbjct 134818 GTTGGCCATGGGTGAGGGCTGGCATAACTATCACCACGTCTTCCCCTGGGACTACAAGGC 134759
Query 108939 CGCCGAGTTGGGGAACGA---CTTTAATTTCACC 108969
|| ||| |||| ||| | ||| |||||||||
Sbjct 134758 AGCTGAGCTGGGTAACTATACCTTCAATTTCACC 134725
Score = 82.4 bits (90), Expect = 6e-11
Identities = 126/177 (71%), Gaps = 2/177 (1%)
Strand=Plus/Minus
Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525
||||||| ||||| | || |||||||||||||| || ||| || || || |||||
Sbjct 135742 TGGGTGCGAGATCATCGAGTCCACCACAAGTACTCGGAGACGGATGCTGATCCTCACAAT 135683
Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585
|||||| | || |||| || | || ||||| ||||| |||||| ||| | || ||
Sbjct 135682 GCCAACCGTGGCTTCTTCTTTGCCCATGTGGGCTGGCTGATGATGCTGAAGCATCCGGAT 135623
Query 108586 GTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGTGGT 108641
|| | || | ||||| | || |||||||| ||||| | | ||||| |||||
Sbjct 135622 GT-ACTGCGTCGTGGTCGCCAGATTGACATGACCGACATTTTGGCTGATCCCGTGGT 135567
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381766490727264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |