Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq41 100 2e-16 seq175 84.2 2e-11 seq1172 82.4 6e-11 >seq41 Length=2292486 Score = 100 bits (110), Expect = 2e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 |||||||| |||||||| ||||| | ||||| ||||||||||||| | ||| | | Sbjct 1697297 ACGGCCGGAGTCCATCGTCTGTGGTCGCACAAGGCCTACAAGGCCAAGACGCCGCTGCGC 1697238 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 | ||||| ||| ||| ||| |||| ||||||| |||| | ||||| | Sbjct 1697237 ATCTTCCTCATGCTGTGCCAGTCGCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGT 1697178 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || || | || |||||||| | | | ||||| ||||| || |||||| || | Sbjct 1697177 GACCATCGTGTGCACCACAAATTCACGGACACACACGCCGATCCCCACAACTCCCGTCGC 1697118 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 || |||| ||| | ||| |||||||||| ||| | ||| ||||||| |||| Sbjct 1697117 GGCTTCTTCTTCGCCCACATGGGATGGCTGATGTGCAAGAAGCACCCCGATGTGA 1697063 Score = 86.0 bits (94), Expect = 5e-12 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 108889 GGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTG 108948 || |||||||||||||||||||||||||| ||||||| ||||||||||| |||||| || Sbjct 1696699 GGTGAGGGATGGCACAACTACCACCACGTCTTCCCCTGGGACTACAAGGCAGCCGAGCTG 1696640 Query 108949 GG 108950 || Sbjct 1696639 GG 1696638 >seq175 Length=1789090 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||||| ||||||| | | |||||||| |||||||| ||| |||||||||||||| Sbjct 781492 TGGGTGCGCGATCACCGAATGCACCACAAATACTCTGAAACGGATGCCGACCCACACAAT 781551 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 | |||||| |||| | ||| ||| | || ||||| || ||| ||| | ||||| Sbjct 781552 ACGTCCAGGGGTTTCTTCTACTCCCACATAGGCTGGCTGCTGGTGAAGAAGCATCCCGAT 781611 Query 108586 GTGA 108589 |||| Sbjct 781612 GTGA 781615 >seq1172 Length=6101896 Score = 82.4 bits (90), Expect = 6e-11 Identities = 75/94 (80%), Gaps = 3/94 (3%) Strand=Plus/Minus Query 108879 GTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGC 108938 |||||| | || ||||| ||||| ||||| |||||||| ||||||| ||||||||||| Sbjct 134818 GTTGGCCATGGGTGAGGGCTGGCATAACTATCACCACGTCTTCCCCTGGGACTACAAGGC 134759 Query 108939 CGCCGAGTTGGGGAACGA---CTTTAATTTCACC 108969 || ||| |||| ||| | ||| ||||||||| Sbjct 134758 AGCTGAGCTGGGTAACTATACCTTCAATTTCACC 134725 Score = 82.4 bits (90), Expect = 6e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 108466 TGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAAC 108525 ||||||| ||||| | || |||||||||||||| || ||| || || || ||||| Sbjct 135742 TGGGTGCGAGATCATCGAGTCCACCACAAGTACTCGGAGACGGATGCTGATCCTCACAAT 135683 Query 108526 GCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGAC 108585 |||||| | || |||| || | || ||||| ||||| |||||| ||| | || || Sbjct 135682 GCCAACCGTGGCTTCTTCTTTGCCCATGTGGGCTGGCTGATGATGCTGAAGCATCCGGAT 135623 Query 108586 GTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGGTGGT 108641 || | || | ||||| | || |||||||| ||||| | | ||||| ||||| Sbjct 135622 GT-ACTGCGTCGTGGTCGCCAGATTGACATGACCGACATTTTGGCTGATCCCGTGGT 135567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381766490727264