Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq98 89.7 4e-13 seq1117 87.8 1e-12 >seq98 Length=20832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || |||||||| || || || |||||||| ||| ||| | | | || || Sbjct 11186 ACCAAGTGCAGGGTAGATTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCATCCTCC 11245 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 || |||||||| ||| | || | |||||| ||||| | || ||||| |||||||| Sbjct 11246 AACTGTTTGCCGGCGAAAATGAGACGCTGCTGGTC-TGGGGGATTCCCTCCTTGTCTTGG 11304 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || || ||| | || || || ||||||||||| || Sbjct 11305 ATCTTGGCCTTCACGTTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTAATGGTCTTG 11364 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || || ||||| Sbjct 11365 CCAGTAAGAGTCTTCACGAAGATCTGCAT 11393 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/209 (69%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || |||||||| || || || ||||| ||||| || | | | | || || Sbjct 10048 ACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCCGACAGGGTGCGCCCATCCTCC 10107 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | ||||||||||| ||||| | || ||||| |||||||| Sbjct 10108 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTC-TGGGGGATTCCCTCCTTGTCTTGG 10166 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| || || | || || || ||| | || || || ||||||||||| || Sbjct 10167 ATCTTGGCCTTCACGTTCTCGATGGTGTCGGAAGGCTCCACCTCCAAGGTAATGGTCTTG 10226 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || || ||||| Sbjct 10227 CCAGTAAGAGTCTTCACGAAGATCTGCAT 10255 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || |||||||| || || || ||||| ||||| || | | | || || Sbjct 11641 ACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCAGACAGGGTGCGGCCATCCTCC 11700 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | ||||||||||| ||||| || ||||| |||||||| Sbjct 11701 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 11760 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| || || | || || || ||| | || || |||| ||| ||||| || Sbjct 11761 ATTTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCCACCTCTAGGGTGATGGTCTTG 11820 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||||||| || || || || ||||| Sbjct 11821 CCAGTCAGAGTCTTCACGAAGATCTGCAT 11849 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/209 (69%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || |||||||| || ||||| ||||| ||||| || | | | || || Sbjct 12551 ACCAAGTGCAGGGTAGATTCCTTTTGGATGTTATAATCAGACAGGGTGCGGCCATCCTCC 12610 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||| ||| | ||||||||||| ||||| | || ||||| |||||||| Sbjct 12611 AGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTC--TGGGGATTCCCTCCTTGTCCTGG 12668 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 |||||| || || | || || || ||| | || || || | ||| ||||| || Sbjct 12669 ATTTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCCACCTCCAGGGTGATGGTCTTG 12728 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || || ||||| Sbjct 12729 CCAGTAAGAGTCTTCACGAAGATCTGCAT 12757 >seq1117 Length=387944 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || |||||||| ||| || | | | ||||| | || Sbjct 178729 ATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTG 178788 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 ||||| ||| | ||||||||||| ||||| || ||||| |||||||| || || Sbjct 178789 CTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTT 178848 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| || ||| | || || || ||| | || || || || |||||||| || || | Sbjct 178849 TGC-CTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAG 178907 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176 | ||||| || || || || ||||| Sbjct 178908 TAAGAGTCTTCACGAAGATCTGCAT 178932 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || |||||||| ||| || | | | ||||| | || Sbjct 179869 ATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGTCCATCTTCCAGCTG 179928 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TT 15091 ||||| ||| | ||||||||||| ||||| || ||||| |||||||| || || Sbjct 179929 CTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTT 179988 Query 15092 TGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTG 15151 ||| || ||| | || || || ||| | || || || || |||||||| || || | Sbjct 179989 TGC-CTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAG 180047 Query 15152 TCAGAGTTTTTACAAAAATTTGCAT 15176 | ||||| || || || || ||||| Sbjct 180048 TGAGAGTCTTCACGAAGATCTGCAT 180072 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || |||||||| ||| ||| | | | || || | || Sbjct 175993 ATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTG 176052 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||| ||| | ||||||||||| ||||| || ||||| |||||||| || || Sbjct 176053 TTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTT 176112 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || | || || || ||| | || || || || |||||||| || || || Sbjct 176113 AGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAGT 176172 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || || ||||| Sbjct 176173 AAGAGTCTTCACGAAGATCTGCAT 176196 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||||||||| || || || || |||||||| ||| ||| | | | || || | || Sbjct 176905 ATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTG 176964 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||| ||| | ||||||||||| ||||| || ||||| |||||||| || || Sbjct 176965 TTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTT 177024 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || | || || || ||| | || || || || |||||||| || || || Sbjct 177025 AGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAGT 177084 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||||| || || || || ||||| Sbjct 177085 AAGAGTCTTCACGAAGATCTGCAT 177108 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || || |||||||| || || || ||||| ||||| || | | | || || Sbjct 175531 AACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCCGACAGGGTGCGGCCATCCTC 175590 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || ||||| ||| | ||||||||||| ||||| || ||||| |||||||| Sbjct 175591 CAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 175650 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| || || | || || || ||| | || || || || |||||||| || Sbjct 175651 GATTTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCCACCTCCAAAGTAATGGTCTT 175710 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || || || ||||| Sbjct 175711 GCCAGTAAGAGTCTTCACGAAGATCTGCAT 175740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357386093650460