Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq185 228 1e-54 seq991 176 7e-39 seq202 105 1e-17 >seq185 Length=662383 Score = 228 bits (252), Expect = 1e-54 Identities = 546/814 (67%), Gaps = 30/814 (4%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| |||||||| ||||||||||||||||| |||| || || |||||||| ||| Sbjct 114005 CACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCATGAAGTTGAA 114064 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| || ||| || || || | | | |||| | || ||||| Sbjct 114065 CGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGGCGATCAGCCAC 114124 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 ||| || ||||| || | |||| | || ||||| || || | ||| | ||||| || | Sbjct 114125 AAACTCAATGTA-CTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTCACGGGCAGGG 114183 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGT 159880 | || | || ||||||| ||||| || || || || | |||| ||| || || Sbjct 114184 CATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCT-CGATGATGCGC 114242 Query 159881 TCGTACCCCGGCT--TGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGT 159938 ||| | ||| ||| | | ||| || |||| || |||||||||||||| Sbjct 114243 TCGCGACGCGGTCGCTGCACCAGATG-----CTGGAACATCAGCACCGCAAAGTCGCAGT 114297 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 |||| |||||||| || ||||||| ||||||||| | | | ||||| ||||| | || | Sbjct 114298 GCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGGCCGC 114357 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCG 160058 || || ||||| ||||| | ||||| ||||| || ||||| ||||| ||||| | Sbjct 114358 GCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTCGACGGCGG 114417 Query 160059 CAAACGCCACGAGCCTCTCACCAAAAGAGGC---GTTGGTGTCATGGGTCCACCTTTTGG 160115 |||| || | || || ||| ||||| ||| |||| | | |||| || Sbjct 114418 CAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGGAG---GAGATCCAGGACAGGG 114474 Query 160116 CCCATTCAGCCTTCTTTGCGATGCA----CGGCATGCGCTCGACGGCGTTAAACAATCTG 160171 |||| |||| ||||||| | || ||||||| ||||| ||| ||||||| | Sbjct 114475 CCCAGTCAG----CTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGTAG 114530 Query 160172 TCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGC 160231 ||| ||| | | |||| ||| ||| | |||||| |||||| || | || Sbjct 114531 TCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGG 114590 Query 160232 ACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTC-CAGATACTGCACCTC 160290 || || || ||||| ||||| ||| ||||| | ||||| ||| ||||||||| Sbjct 114591 ACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGAT-CTGCACCTC 114649 Query 160291 CTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGC 160350 ||| |||| | | |||| || | || || | || |||| ||| |||||||| || Sbjct 114650 CTGACTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAACGC 114709 Query 160351 CAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCAC 160410 || ||| || ||||||||||| | ||||| | || || | | ||||| || | Sbjct 114710 CAGCACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGC---GATGCCAGTCGGTTAA 114766 Query 160411 GTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAA 160444 || | || || ||| ||||||||| || ||||| Sbjct 114767 ATCCTTGGACAGATCCACCTCTTCCACGGTCCAA 114800 >seq991 Length=691118 Score = 176 bits (194), Expect = 7e-39 Identities = 460/695 (66%), Gaps = 10/695 (1%) Strand=Plus/Plus Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGT 203891 ||| | |||||| || |||||||| ||||||||| | || ||| | | | ||||||| Sbjct 357706 CCTGCTTCTTGTTGACGGTGAACTGTATGGCGTTCGCAGCCGGCTTCGTGCGGAGATAGT 357765 Query 203892 ACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA 203951 |||| ||||| || ||||| || |||| ||| | || ||||| | ||| |||| Sbjct 357766 ACATTCCGGTTTTAAGGCCAGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCAT 357825 Query 203952 CGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGAT 204011 |||||| ||||| | |||||||| | || || || || |||||||| | | |||| Sbjct 357826 AGTTGGGCTCGGCAACATGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGAT 357885 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTC 204071 | || ||||| || || ||| ||| || |||||||||||||||||| ||| || | Sbjct 357886 CCGCAGCCATTTTAATGGTGGACTTGACGGAGATCTCCCACACCGTCTTGTACAGATCGC 357945 Query 204072 TGGTGTGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCT- 204129 || || || | | | | | | ||| || ||||| | || || | ||| Sbjct 357946 GCACATGCTGGGGGATGGCCT-CGATATTCTGAATTGAGCCACGGCTGGAAATTA-TCTG 358003 Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189 || || | || || |||||| | | | | |||| |||| || ||||||| |||| Sbjct 358004 GTTCTTCATATCATCATCCCACAAGTCAAGCTCCGTCAGATCCCTCAACAGGTGGTGGTT 358063 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 | | ||| || || ||||| || || | ||| || | | || ||||| | || || Sbjct 358064 AACCACCTGGAATTCGCCGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGCTC 358123 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309 ||| | ||||| ||||| | ||||| || ||| ||||| |||||||| || | || Sbjct 358124 GAAGGATTCGTTATTGCCCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACCAG 358183 Query 204310 CAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---GTG 204366 ||| ||||| | ||||| | ||| | || | |||||| || |||||| | | Sbjct 358184 CAGAGAGTTCCTGACACCATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAGAG 358243 Query 204367 CATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCT 204426 ||| | || | | ||||||| ||| |||||| || || | || || || || Sbjct 358244 GTTCG---TTGGGACCTTGTCCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACT 358300 Query 204427 GCCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGC 204486 ||||| ||| || ||| || || | | ||||| | || || ||| || Sbjct 358301 GCCCTCGTATGTTTCATACGGACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGC 358360 Query 204487 GTGATAGTACATGGTCTCAAAGATCTGAACGTTTA 204521 | ||| || || || ||||||||||| ||||| Sbjct 358361 GCCATAATAGATAGTTTCAAAGATCTGCTGGTTTA 358395 Score = 93.3 bits (102), Expect = 7e-14 Identities = 200/297 (67%), Gaps = 4/297 (1%) Strand=Plus/Plus Query 205100 ACGTCCATCAGCCCTGGACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTC 205159 || ||| ||| || ||||| || | || |||||||| ||||| ||| || | | Sbjct 358890 ACATCCTGCAGGCCGGGACACTTGTGCGGGCACATCAGCGACCAGTTCTCATTTGCCTCA 358949 Query 205160 ACCCTCTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATT 205219 || | || |||||| || || ||||| ||| | ||||| | ||| || || | | | Sbjct 358950 ACGCGCTTCATAAAGAGATCAGGTATCCAGAGGGCATAAAATAAATCGCGAGCACGATTC 359009 Query 205220 CCGTCGTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGC 205279 | || | || |||||| |||| |||| | | || |||| ||||| ||| Sbjct 359010 TCTTCCTTACCGGTGTTCTTCTTCAGTTCCAAGAATTCAAAAACATCGGAATGCCAGGGC 359069 Query 205280 TCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACC--ATGCGAG 205337 || || | | ||| | ||||| || | |||| |||||||| ||||| | ||| Sbjct 359070 TCCAAGTAGATGGCAAAGGCGCCAGGGCGCTTGCCGCCACCCTGATCCACGTAACGCGCT 359129 Query 205338 TCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGC 205394 ||| | ||||| ||||||||||| || || || || |||| |||||| ||||||| Sbjct 359130 ACATTG--TTGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTCCCATTCGTGC 359184 >seq202 Length=128089 Score = 105 bits (116), Expect = 1e-17 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 203832 CCTTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGT 203891 ||| | |||| | || |||||||| ||||||||| | || ||| | | | ||||| | Sbjct 56835 CCTGCTTCTTATTGACGGTGAACTGTATGGCGTTCGCAGCCGGCTTCGTGCGGAGATAAT 56894 Query 203892 ACATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCA 203951 |||| ||||| || ||||| || |||| ||| | || ||||| | ||| |||| Sbjct 56895 ACATTCCGGTTTTAAGGCCAGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCTT 56954 Query 203952 CGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGAT 204011 |||||| ||||| | |||||||| | || || || | |||||||| | | |||| Sbjct 56955 AGTTGGGCTCGGCAACATGAATGTTGAACGATTGACTCCGATCGATGAATGCACCACGAT 57014 Query 204012 CTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACAC 204054 | || ||||| || || ||| ||| || ||||||||||| Sbjct 57015 CCGCAGCCATTTTAATGGTGGACTTGACGGAGATCTCCCACAC 57057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795141722119360