Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1117 89.7 4e-13 seq98 89.7 4e-13 seq264 86.0 4e-12 >seq1117 Length=387944 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| |||| || ||| || || || |||||||| | | Sbjct 174374 CCTCCACGGAGACGGAGCACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCCGAC 174433 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || ||| ||||||| | ||||||||| || | ||| Sbjct 174434 AGGGTGCGCCCATCCTCCAGCTGCTTGCCGGCAAAAATGAGACGCTGCTGGTCTGGGGGG 174493 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| ||||| || | || | | ||||| | ||||| Sbjct 174494 ATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCCACC 174553 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || || || | ||| || |||||||||||||| Sbjct 174554 TCCAAAGTAATGGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 174600 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| |||| || ||| || || || |||||||| | | Sbjct 175514 CCTCCACGGAGACGGAGAACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCCGAC 175573 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| |||| || || ||| | || || ||||||||||| || | ||| Sbjct 175574 AGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 175633 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| ||||| || | || | | ||||| | ||||| Sbjct 175634 ATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCCACC 175693 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || || || | ||| || |||||||||||||| Sbjct 175694 TCCAAAGTAATGGTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCAT 175740 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || |||| || | |||| |||| |||| ||||| ||| | ||| Sbjct 177374 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAA 177433 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||||||||| || | ||| | || || ||||| || ||| || | || Sbjct 177434 ATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTCACATTC 177493 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||||| ||||||||||| || || || || | ||| || ||| Sbjct 177494 TCGATGGTGTCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAGTGAGAGTCTTCACG 177553 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 177554 AAGATCTGCAT 177564 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || |||| || | |||| |||| |||| ||||| ||| | ||| Sbjct 177830 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAA 177889 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||||||||| || | ||| | || || ||||| || ||| || | || Sbjct 177890 ATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTCACATTC 177949 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||||| ||||||||||| || || || || | ||| || ||| Sbjct 177950 TCGATGGTGTCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAGTAAGAGTCTTCACG 178009 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 178010 AAGATCTGCAT 178020 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || |||| || | |||| |||| |||| ||||| ||| | ||| Sbjct 178286 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAA 178345 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||||||||| || | ||| | || || ||||| || ||| || | || Sbjct 178346 ATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTCACATTC 178405 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||||| ||||||||||| || || || || | ||| || ||| Sbjct 178406 TCGATGGTGTCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAGTGAGAGTCTTCACG 178465 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 178466 AAGATCTGCAT 178476 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || |||| || | |||| |||| |||| ||||| ||| | ||| Sbjct 178970 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAA 179029 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||||||||| || | ||| | || || ||||| || ||| || | || Sbjct 179030 ATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTCACATTC 179089 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||||| ||||||||||| || || || || | ||| || ||| Sbjct 179090 TCGATGGTGTCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAGTAAGAGTCTTCACG 179149 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 179150 AAGATCTGCAT 179160 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || || |||| || | |||| |||| |||| ||||| ||| | ||| Sbjct 179426 TCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCATCCTCCAGCTGTTTGCCGGCGAAA 179485 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | ||||||||| || | ||| | || || ||||| || ||| || | || Sbjct 179486 ATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCTTGGATCTTTGCCTTCACATTC 179545 Query 39649 GCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACG 39708 | | ||||| | ||||| ||||||||||| || || || || | ||| || ||| Sbjct 179546 TCGATGGTGTCGGAAGGCTCCACCTCCAAAGTAATGGTCTTGCCAGTGAGAGTCTTCACG 179605 Query 39709 AAGATCTGCAT 39719 ||||||||||| Sbjct 179606 AAGATCTGCAT 179616 >seq98 Length=20832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| |||| || || || || || || || |||| | Sbjct 10713 CCTCCACGGAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAC 10772 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | ||| |||| |||| ||| || ||| ||||||| | |||||||||||| | || Sbjct 10773 AGAGTACGTCCATCCTCCAGTTGCTTGCCGGCAAAAATGAGACGCTGCTGATCTGGAGGG 10832 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || || ||||| || || |||| || | | ||||| | ||||| Sbjct 10833 ATTCCCTCCTTGTCTTGGATCTTAGCCTTAACGTTCTCAATGGTGTCGGAAGGCTCCACC 10892 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || || || | ||| || |||||||||||||| Sbjct 10893 TCCAAAGTAATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCAT 10939 >seq264 Length=2409178 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 39491 CGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGG 39550 ||||||| |||| |||||| |||||||||| |||| || || || || || ||||||| Sbjct 1047314 CGCCGCCGCGCAGACGCAGAACCAAATGCAGAGTGGACTCCTTCTGGATGTTGTAATCGG 1047255 Query 39551 CCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 || ||| | || |||| || || ||| | || || | ||||||||| || | || Sbjct 1047254 ACAGGGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGG 1047195 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | | ||| || ||||| || || || | || | | ||||| | | || | Sbjct 1047194 GAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGGCTCGA 1047135 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || | || || || || || || ||||| || || |||||||||||| Sbjct 1047134 CCTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCATG 1047085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347363859283148