Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq264 95.1 5e-14 seq991 87.8 7e-12 >seq264 Length=2409178 Score = 95.1 bits (104), Expect = 5e-14 Identities = 238/359 (66%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 451238 TTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAA 451297 ||||||||||| || || || ||||||||||| || ||||| || || || || Sbjct 853547 TTTGCTCCTGAGGAGATCTCCGCTATGGTTCTTGGCAAGATGAAGGAGACCGCTGAGGCC 853488 Query 451298 TATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCA 451357 ||| | || ||||| |||| || ||||||| || || || ||||| ||||| Sbjct 853487 TATCTGGGCAAGAAGGTTACCCATGCTGTCGTTACTGTGCCAGCCTACTTCAACGATGCC 853428 Query 451358 CAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATT 451417 || || || || || || ||||| || ||||||||| | |||| | || || || Sbjct 853427 CAGCGTCAGGCGACCAAGGATGCCGGTGTCATTGCTGGTCTCCATGTGATGCGCATCATC 853368 Query 451418 AATGAACCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaa 451477 || ||||| || || || ||| | || || || || ||| || || || | || Sbjct 853367 AACGAACCCACTGCTGCGGCTATTGCCTACGGTCT-GGACAA--GAAGGA---GGGCGAG 853314 Query 451478 aaaaaTATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATT 451537 || ||| | |||| || ||| |||| || || || ||| || | || | || Sbjct 853313 AAGAATGTGCTAGTGTTCGATCTTGGCGGCGGTACCTTCGATGTCTCCCTGCTGACCATC 853254 Query 451538 GAAGATGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 || | || || || || || ||| ||||| |||||||| ||| | || ||||| || Sbjct 853253 GATAACGGTGTGTTCGAGGTGGTGGCCACCAACGGTGATACCCATTTGGGTGGTGAGGA 853195 >seq991 Length=691118 Score = 87.8 bits (96), Expect = 7e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | || ||||| || || || || || || || || |||||||| || ||| | || Sbjct 450501 ATGCAGATCTTCGTGAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCGTCG 450560 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | ||| || ||||| || || |||||||||||||| ||||| Sbjct 450561 GACACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 450620 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | || || | || || || || |||||||| | || | | || ||||| Sbjct 450621 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 450680 Query 391230 ATTGATAAGGA 391240 ||| | ||||| Sbjct 450681 ATTCAGAAGGA 450691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975684074362448