Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq1255 152 4e-31
seq1254 95.1 9e-14
>seq1255
Length=5079760
Score = 152 bits (168), Expect = 4e-31
Identities = 556/866 (64%), Gaps = 6/866 (1%)
Strand=Plus/Minus
Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910
||||| |||| ||||||| ||| |||| ||||| | | || || || || || || |
Sbjct 1949580 AATCAGTTCCCTCGAACAGAGAGTCAATCTCAATGCTGGCCTGGGTGGAGGAGGAGAGGG 1949521
Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 517968
|| || ||||| || || || || | || | || | ||| ||| ||| | |
Sbjct 1949520 TTCGCTTTGCACGCTCGCAGGCAGTGCGCAGACGACGCAGGGCGC--GCTTGTTGGTGGT 1949463
Query 517969 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 518028
|| ||| | || | || | |||||| || | || | || || ||||| || ||
Sbjct 1949462 CAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACGAAGTGCGTGACCAGACGGTTGTC 1949403
Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088
||||| ||||| ||||| | |||| || | || | | || | || | || ||
Sbjct 1949402 GAAATCCTCACCACCCAAATGGGTATCACCGGCGGTGGACTTGACCTCAAAGATACCGTC 1949343
Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148
|| | |||| || | ||||| ||| || ||||||| ||| || || || || ||
Sbjct 1949342 ATCGATCGACAGAATGGACACATCGAAGGTGCCGCCACCCAGATCGAAGATGAGCACGTT 1949283
Query 518149 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208
|| | || || || |||||||| |||| ||| ||||| || || || ||
Sbjct 1949282 GCGCTCGCCAACGGCCTTCTTGTCCAGACCATAGGCAATAGCCGCAGCCGTGGGCTCGTT 1949223
Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268
||| || | | ||||| ||||| || || |||| ||||| || ||||| || | ||
Sbjct 1949222 AATGATACGAAGCACATTCAGACCGGCGATGGTTCCGGCATCCTTGGTGGCCTGACGCTG 1949163
Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328
|| ||||| || || || || || || || || || | || || || || | |||
Sbjct 1949162 GGAGTCGTTGAAGTAGGCCGGCACGGTGATGACCGCGTTGGTCACAGTCTTGCCCAGATA 1949103
Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATA 518388
|| || || | ||||| || | | | ||| || || || | || |||||| |
Sbjct 1949102 GGCCTCGGCAGTCTCCTTCATCTTGGTGAGCACCATCGAGGAGATCTCCTC-GGGGAAGA 1949044
Query 518389 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 518447
| ||| || | | || | || |||| | || ||| | |||| | | |
Sbjct 1949043 AGGTCTTCTTCTCGTCCTTGTAAGTCACCTCAATCTTGGGCTTACCATCAACGCTGACCA 1948984
Query 518448 CTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 518507
| | || ||||||| ||||| || || || || ||||| || | | ||||
Sbjct 1948983 CCTCGAAGGGCCAGTGCTTCATGTCCGACTGCACGGCGGAGTCATCGAACTTGCGGCCAA 1948924
Query 518508 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTG 518567
| | || || ||||| || || || | ||| || || || || | || | ||||| |
Sbjct 1948923 TGAGACGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATCGCCACCTGGTTCTTGGCGG 1948864
Query 518568 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 518627
|||| || |||||| | || || || || || | |||||| ||||| || || |||||||
Sbjct 1948863 CATCGCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGTGTGGTACGATTAC 1948804
Query 518628 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 518687
| || || || || || || || || || |||| || | || || || || | |
Sbjct 1948803 CCTGGTCGTTAGCGATGATCTCGACCTTGCCATGCTGGAACACTCCCACGCACGAGTAGG 1948744
Query 518688 TTGTTCCTAAATCAATACCAATAGCA 518713
| || || ||||||||||||| ||||
Sbjct 1948743 TGGTGCCCAAATCAATACCAACAGCA 1948718
>seq1254
Length=5769022
Score = 95.1 bits (104), Expect = 9e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176
|| |||||||||| || || || ||||| || ||| | |||| ||||| ||
Sbjct 2593995 GTGCCACCACCCAAGTCGAATATGAGTACGTTGCGCTCTCCCTTGAGGTTCTTATCGAGT 2593936
Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236
|| || || || |||||||| || ||||| || || || || | ||||||||||| |||
Sbjct 2593935 CCGTAGGCCAAGGCAGCAGCCGTGGGTTCGTTGATGATCCTTAGCACATTAAGACCCGCA 2593876
Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296
|| || ||||| || || || || | ||| ||||||||| || || || || ||
Sbjct 2593875 ATGGAGCCCGCATCCTTGGTAGCCTGCCGTTGGCTATCGTTAAAGTAAGCCGGCACCGTG 2593816
Query 518297 ATAACGGCATCAGTTAC 518313
|| ||||| || ||||
Sbjct 2593815 ATCACGGCGTCCTTTAC 2593799
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3780755110813336
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |