Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq1255 152 4e-31 seq1254 95.1 9e-14 >seq1255 Length=5079760 Score = 152 bits (168), Expect = 4e-31 Identities = 556/866 (64%), Gaps = 6/866 (1%) Strand=Plus/Minus Query 517851 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 517910 ||||| |||| ||||||| ||| |||| ||||| | | || || || || || || | Sbjct 1949580 AATCAGTTCCCTCGAACAGAGAGTCAATCTCAATGCTGGCCTGGGTGGAGGAGGAGAGGG 1949521 Query 517911 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 517968 || || ||||| || || || || | || | || | ||| ||| ||| | | Sbjct 1949520 TTCGCTTTGCACGCTCGCAGGCAGTGCGCAGACGACGCAGGGCGC--GCTTGTTGGTGGT 1949463 Query 517969 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 518028 || ||| | || | || | |||||| || | || | || || ||||| || || Sbjct 1949462 CAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACGAAGTGCGTGACCAGACGGTTGTC 1949403 Query 518029 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 518088 ||||| ||||| ||||| | |||| || | || | | || | || | || || Sbjct 1949402 GAAATCCTCACCACCCAAATGGGTATCACCGGCGGTGGACTTGACCTCAAAGATACCGTC 1949343 Query 518089 TTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 518148 || | |||| || | ||||| ||| || ||||||| ||| || || || || || Sbjct 1949342 ATCGATCGACAGAATGGACACATCGAAGGTGCCGCCACCCAGATCGAAGATGAGCACGTT 1949283 Query 518149 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 518208 || | || || || |||||||| |||| ||| ||||| || || || || Sbjct 1949282 GCGCTCGCCAACGGCCTTCTTGTCCAGACCATAGGCAATAGCCGCAGCCGTGGGCTCGTT 1949223 Query 518209 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 518268 ||| || | | ||||| ||||| || || |||| ||||| || ||||| || | || Sbjct 1949222 AATGATACGAAGCACATTCAGACCGGCGATGGTTCCGGCATCCTTGGTGGCCTGACGCTG 1949163 Query 518269 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATA 518328 || ||||| || || || || || || || || || | || || || || | ||| Sbjct 1949162 GGAGTCGTTGAAGTAGGCCGGCACGGTGATGACCGCGTTGGTCACAGTCTTGCCCAGATA 1949103 Query 518329 AGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATA 518388 || || || | ||||| || | | | ||| || || || | || |||||| | Sbjct 1949102 GGCCTCGGCAGTCTCCTTCATCTTGGTGAGCACCATCGAGGAGATCTCCTC-GGGGAAGA 1949044 Query 518389 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 518447 | ||| || | | || | || |||| | || ||| | |||| | | | Sbjct 1949043 AGGTCTTCTTCTCGTCCTTGTAAGTCACCTCAATCTTGGGCTTACCATCAACGCTGACCA 1948984 Query 518448 CTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 518507 | | || ||||||| ||||| || || || || ||||| || | | |||| Sbjct 1948983 CCTCGAAGGGCCAGTGCTTCATGTCCGACTGCACGGCGGAGTCATCGAACTTGCGGCCAA 1948924 Query 518508 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTG 518567 | | || || ||||| || || || | ||| || || || || | || | ||||| | Sbjct 1948923 TGAGACGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATCGCCACCTGGTTCTTGGCGG 1948864 Query 518568 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 518627 |||| || |||||| | || || || || || | |||||| ||||| || || ||||||| Sbjct 1948863 CATCGCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGTGTGGTACGATTAC 1948804 Query 518628 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 518687 | || || || || || || || || || |||| || | || || || || | | Sbjct 1948803 CCTGGTCGTTAGCGATGATCTCGACCTTGCCATGCTGGAACACTCCCACGCACGAGTAGG 1948744 Query 518688 TTGTTCCTAAATCAATACCAATAGCA 518713 | || || ||||||||||||| |||| Sbjct 1948743 TGGTGCCCAAATCAATACCAACAGCA 1948718 >seq1254 Length=5769022 Score = 95.1 bits (104), Expect = 9e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 || |||||||||| || || || ||||| || ||| | |||| ||||| || Sbjct 2593995 GTGCCACCACCCAAGTCGAATATGAGTACGTTGCGCTCTCCCTTGAGGTTCTTATCGAGT 2593936 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || || || || |||||||| || ||||| || || || || | ||||||||||| ||| Sbjct 2593935 CCGTAGGCCAAGGCAGCAGCCGTGGGTTCGTTGATGATCCTTAGCACATTAAGACCCGCA 2593876 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 518296 || || ||||| || || || || | ||| ||||||||| || || || || || Sbjct 2593875 ATGGAGCCCGCATCCTTGGTAGCCTGCCGTTGGCTATCGTTAAAGTAAGCCGGCACCGTG 2593816 Query 518297 ATAACGGCATCAGTTAC 518313 || ||||| || |||| Sbjct 2593815 ATCACGGCGTCCTTTAC 2593799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780755110813336