Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq991 147 3e-30 seq202 87.8 2e-12 seq64 84.2 3e-11 >seq991 Length=691118 Score = 147 bits (162), Expect = 3e-30 Identities = 1108/1774 (62%), Gaps = 40/1774 (2%) Strand=Plus/Plus Query 109398 CGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATG 109457 || ||||| ||| ||||| ||||| || ||||| || ||||||||||| | ||| | ||| Sbjct 357746 CGGCTTCGTGCGGAGATAGTACATTCCGGTTTTAAGGCCAGCCTTCCACGAGTAAAAATG 357805 Query 109458 CATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAA-GTTCATCGACTGAGACT 109516 || || | || ||| | || || ||| || | || ||| | ||| ||| || Sbjct 357806 TATGGACGTCAGCTTGCCATA-GTTGGGCTCGGCAACATGAATGTTGAACGATTGACTCT 357864 Query 109517 GATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCC 109576 ||||||||||| ||||||||| || ||||| | ||| | |||| | || |||| Sbjct 357865 GATCGATGAATGCACCACGATCCGCAGCCATTTTAATGGTGGACTTGACGGAGATCTCCC 357924 Query 109577 AGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGC 109636 | || |||||||||| || | || | ||| ||| || |||| || ||||| |||| Sbjct 357925 ACACCGTCTTGTACAGATCGCGCACATGCTGGGGGATGGCCTCGATATTCTGAATTGAGC 357984 Query 109637 CACCAGCCT--TCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAG 109694 ||| | || | || | | |||||| || | ||| | | | || | || Sbjct 357985 CAC--GGCTGGAAATTATCTGGTTCTTCATATCATCATCCCACAAGTCAAGCTCCGTCAG 358042 Query 109695 AT-CGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGT 109753 || | ||||| || || | ||| ||||| ||||| || | || |||||| | Sbjct 358043 ATCCCTCAAC-AGGTGGTGGTTAACCACCTGGAATTCGCCGGAGAGAACGCGTCGTGTAT 358101 Query 109754 AGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAG 109813 |||| || || ||||| || ||||| | || || ||||| | || || |||||||| | Sbjct 358102 AGATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGCCCATTATCTGGGCAGTGGATG 358161 Query 109814 CTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCAC 109873 | || |||||||| || | || ||| ||| | || ||| | |||| | | ||| Sbjct 358162 CCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACACCATGTTTCTTGATCGACTCCT 358221 Query 109874 GCATTGCGTCCCAATCATAACGACCACTAAATTTAGTCTCACC--ATCCCACATATCTGG 109931 || | |||| || ||| | || | ||| ||||||||||| Sbjct 358222 TCAGCTTGGCCCAGTC-------CCA-GAGGTTCGTTGGGACCTTGTCCCACATATCGTA 358273 Query 109932 TTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTC 109991 ||||| | |||| | ||| |||| | | | || |||| || || ||| Sbjct 358274 CTGAAGAATTCCCTTGCTTACGGGACTGCCCTCGTATGTTTCATACGGACCTTCGGCCTG 358333 Query 109992 GGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATT 110051 ||||| || | || || ||||| ||| ||| ||||| ||||| || || || Sbjct 358334 GGCCAGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCAAAGATCTGCTGGTT 358393 Query 110052 CATGAGGCGAGACTCTTCACAGTCG-AAGGGAAGACCACAAAGAATAAACACATCCGCTA 110110 | ||| | | ||| || | ||| ||||||| || ||||| || |||| || | Sbjct 358394 TAGGAGACCTGCCTCCTCGCTTTCGTAAGGGAATCTCA-TCAGAATCAAGGCATCAGCAA 358452 Query 110111 GACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTA 110170 |||||||| || | ||||||||||||||| ||| || || || || | | Sbjct 358453 AACCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGATTTCCGGGCCTCTGGCA 358512 Query 110171 CGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTT 110230 ||| ||| | ||| ||| || | | ||| |||||||| | ||| ||||| |||| | Sbjct 358513 GGGGATAATAATTGATGTCAATAATCTTATTCAGATTCTTAGCCACTGTCTTAGTGACCT 358572 Query 110231 CATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTGGGGAGAGCAA 110290 | | ||||| | | ||| ||| || |||| | || | || |||||| | Sbjct 358573 CCTTCAGTTTCTTAAAGTCGTACG---TCTTCTCAGGGGTCACGAACATGTTGAGAGCGA 358629 Query 110291 TAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCG--GTGTATTCCAAAATTTCCGT 110348 | || || || ||||| || | | ||||| | || | || || | ||||| || Sbjct 358630 TGGATGCCAGGTTGCAAACGGCGATTTCGTC--GGGCGACGAATACTCAACGATTTCTGT 358687 Query 110349 ACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGC 110408 || | || | ||| ||| || | |||| |||||| || ||||||||| Sbjct 358688 GCAAAGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCATGC 358747 Query 110409 ATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCA 110468 |||||| | ||||| || || | ||||| ||| ||| | || | ||||| || Sbjct 358748 ATCCTTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTCAATGATGGCGAACC- 358806 Query 110469 TACATCGGC--GGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTAC 110526 ||| | | || || || || || ||||| ||||||| ||| |||| Sbjct 358807 -ACAGGGACTGAGCCTTAACCGTCCGATTGGCTTTTCCTTCGGCCTCGTATTTGAGGTAC 358865 Query 110527 AAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAG 110586 || | |||||||| | || | ||||| || || ||||| || || | Sbjct 358866 AATTGGTCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACACTTGTGCGGGCACATC 358925 Query 110587 AGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCC 110646 || ||||| || || ||||||| | |||||| || || ||||| ||||| | || Sbjct 358926 AGCGACCAGTTCTCATTTGCCTCAACGCGCTTCATAAAGAGATCAGGTATCCAGAGGGCA 358985 Query 110647 GAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAG 110706 | || | || || |||| |||||| | ||| ||| || ||||| || Sbjct 358986 TAAAATAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCTTCTTCAGTTCCAAGAAT 359045 Query 110707 TCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC------CTTACGA 110760 || | | ||| || ||||| || || | |||| || | || || ||| | Sbjct 359046 TCAAAAACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGGCGCCAGGGCGCTT--GC 359103 Query 110761 CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATT 110820 || || |||| | || || || ||| |||||||| | ||||| |||| | Sbjct 359104 CG-CCACCCTGATCCACGTAACGCGCTACATTGTTGAAGACTCGCAGCATGGGAACGAGG 359162 Query 110821 CCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATA 110880 |||| ||| ||||| || || | || || |||||||| ||| |||| | Sbjct 359163 CCATTGGAGGTCCCATTCGTGCCACATATCGAGGTGCCCTTGGCACGGATGCAATGGACA 359222 Query 110881 TGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAA 110940 | || ||||| || |||||| |||| ||| ||||| | | | | || Sbjct 359223 TTCAGGCCAATGCCGCCCGCCGACTTGGAAATCATGGCACAGTGTTCCACCGACTTGAAA 359282 Query 110941 ATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGA 111000 ||||| || |||||||| | | | | | || ||||| || || | || || || Sbjct 359283 ATACCTTCGATCGAATCGGATGTCATAGTCAGAAGGAAGCAGGACGAGAGTTGCGGTCGG 359342 Query 111001 GGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTG 111060 || | || ||| || || |||| || || |||| | | | |||| | Sbjct 359343 TTAGTGGCAGCGGCGAACAGAGTGGGTGAGGCGTGTGTGAAGAAGCGCTCTGACAGCAAA 359402 Query 111061 TTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATG 111120 ||||| || || | |||| | ||||| ||| || || ||||| || || ||||| Sbjct 359403 TTGTAGGTCTCAACAGCGGCATCGATATCTTCACCATGGATTCCAATCGCCACGCGCATT 359462 Query 111121 AACATATATTGAGGCGTTTCGATTAGCTTTCCAT 111154 | ||||| ||| ||| |||| | ||| |||| Sbjct 359463 AGCATATGTTGCGGCCGCTCGACAATCTTGCCAT 359496 >seq202 Length=128089 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 109398 CGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATG 109457 || ||||| ||| ||||||||||| || ||||| || ||||||||||| | ||| | ||| Sbjct 56875 CGGCTTCGTGCGGAGATAATACATTCCGGTTTTAAGGCCAGCCTTCCACGAGTAAAAATG 56934 Query 109458 CATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAA-GTTCATCGACTGAGACT 109516 || || | || || | || || ||| || | || ||| | ||| ||| | Sbjct 56935 TATGGACGTCAGCTT-GCCTTAGTTGGGCTCGGCAACATGAATGTTGAACGATTGACTCC 56993 Query 109517 GATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCC 109576 ||||||||||| ||||||||| || ||||| | ||| | |||| | || |||| Sbjct 56994 GATCGATGAATGCACCACGATCCGCAGCCATTTTAATGGTGGACTTGACGGAGATCTCCC 57053 Query 109577 AGACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGC 109636 | | |||||||| || | || | ||| ||| || |||| || ||||| |||| Sbjct 57054 ACA----CTTGTACAGATCGCGCACATGCTGGGGGATGGCCTCGATATTCTGAATTGAGC 57109 Query 109637 CAC 109639 ||| Sbjct 57110 CAC 57112 >seq64 Length=3330565 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| ||| | Sbjct 2674402 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGGTTCGATCCCTCAT 2674461 Query 136777 GGGAACAGCTT--TTAGATATATTTTTT 136802 ||| ||||| || |||||||||| Sbjct 2674462 GGGCCAAGCTTTATTTTTTATATTTTTT 2674489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588966016856800