Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1171 93.3 5e-14 >seq1171 Length=1009974 Score = 93.3 bits (102), Expect = 5e-14 Identities = 186/272 (68%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 158421 TGACATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCA 158480 |||||||||||| |||| || | || || |||| |||| || || || || || Sbjct 960281 TGACATTGCTGTGGGTACCTCTCAGCGCTTGGGAGTTCCCCTGGGTTATGGTGGCCCCCA 960340 Query 158481 TGCTGCATTCTTTGCAACAACAGACA-AGTATAAGA-GAAAGATACCTGGCAGAATTGTA 158538 ||||| ||||||||| | || ||| ||| | | | ||| || ||| | || | Sbjct 960341 TGCTGGATTCTTTGC--CTGCAAACAGAGTCTGGTACGCCTGATGCCAGGCCGCATGATC 960398 Query 158539 GGTCAGTCAGTAGATAGCGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAG 158598 ||| | | || | || |||||| | || || | | || || ||||| | ||| Sbjct 960399 GGTGTGACCCGGGACATGGACGGTAATGATGCCTATCGCCTGGCCCTGCAGACACGCGAG 960458 Query 158599 CAGCATATCAGAAGAGACAAAGCAACCAGTAACATCTGCACAGCACAAGCACTGCTGGCT 158658 ||||| ||| | || ||||| || ||||||||||| |||||||| ||||| || ||||| Sbjct 960459 CAGCACATCCGCAGGGACAAGGCCACCAGTAACATTTGCACAGCTCAAGCTCTACTGGCC 960518 Query 158659 AATATGTCTGGGTTCTATGCAGCATATCATGG 158690 || ||||| | | ||||| |||||||| Sbjct 960519 AACATGTCGGCCATGTATGCCATCTATCATGG 960550 Score = 89.7 bits (98), Expect = 6e-13 Identities = 174/249 (70%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 159534 TGAACTGTCATGTATTATGATTACATATCCATCTACACATGG-TGTATTTGAAACAAACA 159592 ||||||||| || | ||||| || ||||| || || ||||| ||| || || ||||| Sbjct 961486 TGAACTGTCCTGCCTGATGATCACCTATCCGTCCAC-CATGGGTGTCTTCGAGG-AAACA 961543 Query 159593 TCAGACAGATATGTA-AGATTGTTC-ATGAGAATGGTGGTCAGGTATATCTTGATGGTGC 159650 | | || || | | | || || | || |||| || ||||| || || |||||||| Sbjct 961544 GTGG-CGGACATCTGCACACTGATCCACAAGCATGGAGGACAGGTCTACCTGGATGGTGC 961602 Query 159651 AAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCA 159710 ||| | ||||| ||||| || | || | ||||| || ||||| | || Sbjct 961603 CAATATGAATGCCCAGGTGGGATTGTGCCGGCCTGGAGACTACGGCAGTGATGTGTCCCA 961662 Query 159711 TCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCC 159770 ||| ||||| || ||||| ||||||||||| || || ||||| ||||| || | ||||| Sbjct 961663 TCTGAACTTGCACAAGACCTTCTGTATTCCGCACGGTGGTGGTGGTCCAGGAATGGGTCC 961722 Query 159771 TATTGGTGT 159779 ||||| || Sbjct 961723 CATTGGCGT 961731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588041232532160