Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq185 114 1e-20
seq991 111 2e-19
>seq185
Length=662383
Score = 114 bits (126), Expect = 1e-20
Identities = 362/556 (65%), Gaps = 10/556 (2%)
Strand=Plus/Plus
Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002
||||| | ||||||| ||||| || || || || |||||||| | || |
Sbjct 114264 AGATGCTGGAACATCAGCACCGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGC 114323
Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062
|| || || || || | ||||||||||| || | || || | |||||| ||||| |||
Sbjct 114324 TCGTTGGAGAAGGTCAGGCCAGGCATCAGGCCGCGCTTCTTCAGCCAGAAAATAGAGGCA 114383
Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122
|| || ||||| || || || || || ||||| |||| | | |||||| |
Sbjct 114384 AAGCTGCCGCTGAAGAAGATGCCCTCGACGGCGGCAAATGCAATGATCCGCTCTCCAAAG 114443
Query 19123 CTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181
| ||| | | | || ||||| ||| ||||| ||||| || || || ||
Sbjct 114444 TTGGCA-GACTTGGAGGAGATCCAGGACAGGGCCCAGTCAGCTTTGCGCTTCACCGCCGG 114502
Query 19182 CATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATC 19241
||| ||||| || | |||||| || || |||| || | ||| | || | ||
Sbjct 114503 CATGGTCTCGATGGCATTAAACAGGTAGTCCCGCTGATGCGGATCCCGGATGTAAGTGTC 114562
Query 19242 TATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAA 19301
|||| | ||||||||| || ||||| | || || || || ||||| || || || ||
Sbjct 114563 GATCAGCACACTGTACATCTCCGAATGGACGTTCTCCATGGCGATCTGGAAGCCATAGAA 114622
Query 19302 ACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAAC 19361
|| | || ||||| ||||| || || || || | ||||||| || || || ||
Sbjct 114623 GCAGCGGGCCTCTGTGATCTGCACCTCCTGACTGAAACGCTCGACCAGGTTCTCGTTGAC 114682
Query 19362 TATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCATC 19418
|| ||||| || ||||| || || | ||||| || |||| ||| |||||
Sbjct 114683 GATGCCATCGGAGGCGGCAAAGAACGCCAGCACATGGGAGATGAAATGACGTTCGTCATC 114742
Query 19419 TGAGGTTAATG-TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCC 19477
|||| | || ||| || | | ||| || || | ||| || ||||| || ||||
Sbjct 114743 ----CTTAAGGCGATGCCAGTCGGTTAAATCCTTGGACAGATCCACCTCTTCCACGGTCC 114798
Query 19478 AAAAAGAAGCCTCTGC 19493
|||| || ||||| ||
Sbjct 114799 AAAAGGAGGCCTCGGC 114814
>seq991
Length=691118
Score = 111 bits (122), Expect = 2e-19
Identities = 696/1129 (62%), Gaps = 13/1129 (1%)
Strand=Plus/Plus
Query 47319 TTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGT 47378
||||| | || ||||| || || || || | || |||| ||||| | || || ||
Sbjct 358062 TTAACCACCTGGAATTCGCCGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGC 358121
Query 47379 TCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACT 47438
|| | ||||| ||||| || | || || ||||| ||||| || ||||||| || ||
Sbjct 358122 TCGAAGGATTCGTTATTGCCCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACC 358181
Query 47439 AATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAA 47498
| | || || || |||| ||| | ||| ||| |||||
Sbjct 358182 AGCAGAGAGTTCCTGACACCATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAG 358241
Query 47499 AGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAA 47558
|| | | ||| || | ||| | ||| || ||||||||||| || |||| |||
Sbjct 358242 AGGTTCGTTGGGACCTTGTCCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTG 358301
Query 47559 CCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCA 47618
|| | ||||||| ||| ||||| | | || ||||||||||||||||||| |||
Sbjct 358302 CCCTCGTATGTTTCATACGGACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCG 358361
Query 47619 CTATAATATATTGTTTCAAATATTTTTATGTTTA-GATTCCTTGCTTCT-GATGATTCAA 47676
| |||||| || |||||||| || | ||||| || ||| || || | | |||
Sbjct 358362 CCATAATAGATAGTTTCAAAGATCTGCTGGTTTAGGAGACCTGCCTCCTCGCT--TTCGT 358419
Query 47677 AAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTC 47736
|||| | || | ||| || || || |||| ||||| ||||| || |
Sbjct 358420 AAGGGAATCTCATCAGAATCAAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGC 358479
Query 47737 TATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTT 47796
||| | ||| || | || ||||| | ||||| | || || || ||||| |
Sbjct 358480 GATGCCTCAAATTTGATTTCCGGGCCTCTGGCAGGGGATAATAATTGATGTCAATAATCT 358539
Query 47797 TATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA---CT 47853
|||| ||| | || | | ||| ||||| || | ||
Sbjct 358540 TATTCAGATTCTTAGCCACTGTCTTAGTGACCTCCTTCAGTTTCTTAAAGTCGTACGTCT 358599
Query 47854 TGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT 47913
| | | | || ||| | || || || || ||||| || || || || || | || |
Sbjct 358600 TCTCAGGGGTCACGAACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGGCGATTTCGT 358659
Query 47914 TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAAT 47973
|| | ||| | | ||||| | || ||||||| || ||||| || || | ||
Sbjct 358660 CGGGCGACGAATACTCAACGATTTCTGTGCAAAGATTACTGCACTTGATGGTGCCAACAT 358719
Query 47974 TTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTT 48033
| || ||||| | |||| ||||| |||||| | |||||| |||| | ||||| |
Sbjct 358720 TCTGCTGATTGCTCTTCCTGTTGCATGCATCCTTGAACAGCATATAAGGATTGCCAGTCT 358779
Query 48034 CTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC---TAG 48090
| | ||| | |||||||| | ||| | | | ||||| |||| | | | |
Sbjct 358780 CCACCTGCGCCTCAATGATGGCGAACCACAGGGACTGAGCCT---TAACCGTCCGATTGG 358836
Query 48091 CTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT 48150
|||| || |||||||| || || | |||||||| || || | |||| |
Sbjct 358837 CTTTTCCTTCGGCCTCGTATTTGAGGTACAATTGGTCAAATTCGTCGCCCCAAACATCCT 358896
Query 48151 CTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAG 48210
| || ||||| | | || ||||||| ||||| | ||||| | || |
Sbjct 358897 GCAGGCCGGGACACTTGTGCGGGCACATCAGCGACCAGTTCTCATTTGCCTCAACGCGCT 358956
Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270
||||||| | ||| |||||||| || || ||||||||| | || | ||||| |
Sbjct 358957 TCATAAAGAGATCAGGTATCCAGAGGGCATAAAATAAATCGCGAGCACGATTCTCTTCCT 359016
Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330
| || | ||| | || ||||| | || || | | ||| | |||||| || || || |
Sbjct 359017 TACCGGTGTTCTTCTTCAGTTCCAAGAATTCAAAAACATCGGAATGCCAGGGCTCCAAGT 359076
Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390
| || || | | || || || || || || ||||| | || | || |||||
Sbjct 359077 AGATGGCAAAGGCGCCAGGGCGCTTGCCGCCACCCTGATCCACGTAACGCGCTACATTGT 359136
Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCC 48439
| | |||| | ||| || || | ||||| || | ||||| || ||
Sbjct 359137 TGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTCCCATTCGTGCC 359185
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562099272255840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |