Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq185 114 1e-20 seq991 111 2e-19 >seq185 Length=662383 Score = 114 bits (126), Expect = 1e-20 Identities = 362/556 (65%), Gaps = 10/556 (2%) Strand=Plus/Plus Query 18943 AGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAAT 19002 ||||| | ||||||| ||||| || || || || |||||||| | || | Sbjct 114264 AGATGCTGGAACATCAGCACCGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGC 114323 Query 19003 TCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCA 19062 || || || || || | ||||||||||| || | || || | |||||| ||||| ||| Sbjct 114324 TCGTTGGAGAAGGTCAGGCCAGGCATCAGGCCGCGCTTCTTCAGCCAGAAAATAGAGGCA 114383 Query 19063 AATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA 19122 || || ||||| || || || || || ||||| |||| | | |||||| | Sbjct 114384 AAGCTGCCGCTGAAGAAGATGCCCTCGACGGCGGCAAATGCAATGATCCGCTCTCCAAAG 114443 Query 19123 CTAGCATCATTATTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGG 19181 | ||| | | | || ||||| ||| ||||| ||||| || || || || Sbjct 114444 TTGGCA-GACTTGGAGGAGATCCAGGACAGGGCCCAGTCAGCTTTGCGCTTCACCGCCGG 114502 Query 19182 CATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATC 19241 ||| ||||| || | |||||| || || |||| || | ||| | || | || Sbjct 114503 CATGGTCTCGATGGCATTAAACAGGTAGTCCCGCTGATGCGGATCCCGGATGTAAGTGTC 114562 Query 19242 TATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAA 19301 |||| | ||||||||| || ||||| | || || || || ||||| || || || || Sbjct 114563 GATCAGCACACTGTACATCTCCGAATGGACGTTCTCCATGGCGATCTGGAAGCCATAGAA 114622 Query 19302 ACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAAC 19361 || | || ||||| ||||| || || || || | ||||||| || || || || Sbjct 114623 GCAGCGGGCCTCTGTGATCTGCACCTCCTGACTGAAACGCTCGACCAGGTTCTCGTTGAC 114682 Query 19362 TATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAAT---GTTTTTCATC 19418 || ||||| || ||||| || || | ||||| || |||| ||| ||||| Sbjct 114683 GATGCCATCGGAGGCGGCAAAGAACGCCAGCACATGGGAGATGAAATGACGTTCGTCATC 114742 Query 19419 TGAGGTTAATG-TATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCC 19477 |||| | || ||| || | | ||| || || | ||| || ||||| || |||| Sbjct 114743 ----CTTAAGGCGATGCCAGTCGGTTAAATCCTTGGACAGATCCACCTCTTCCACGGTCC 114798 Query 19478 AAAAAGAAGCCTCTGC 19493 |||| || ||||| || Sbjct 114799 AAAAGGAGGCCTCGGC 114814 >seq991 Length=691118 Score = 111 bits (122), Expect = 2e-19 Identities = 696/1129 (62%), Gaps = 13/1129 (1%) Strand=Plus/Plus Query 47319 TTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGT 47378 ||||| | || ||||| || || || || | || |||| ||||| | || || || Sbjct 358062 TTAACCACCTGGAATTCGCCGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGC 358121 Query 47379 TCTATAGATTCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACT 47438 || | ||||| ||||| || | || || ||||| ||||| || ||||||| || || Sbjct 358122 TCGAAGGATTCGTTATTGCCCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACC 358181 Query 47439 AATAAGCTATTTCTTACTCCATATTTTTGTATCTNNNNNNNNNNNNGTTTCCAATCCCAA 47498 | | || || || |||| ||| | ||| ||| ||||| Sbjct 358182 AGCAGAGAGTTCCTGACACCATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAG 358241 Query 47499 AGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTTACTTATCGGAGAA 47558 || | | ||| || | ||| | ||| || ||||||||||| || |||| ||| Sbjct 358242 AGGTTCGTTGGGACCTTGTCCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTG 358301 Query 47559 CCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACTTGCTTCCAATGCA 47618 || | ||||||| ||| ||||| | | || ||||||||||||||||||| ||| Sbjct 358302 CCCTCGTATGTTTCATACGGACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCG 358361 Query 47619 CTATAATATATTGTTTCAAATATTTTTATGTTTA-GATTCCTTGCTTCT-GATGATTCAA 47676 | |||||| || |||||||| || | ||||| || ||| || || | | ||| Sbjct 358362 CCATAATAGATAGTTTCAAAGATCTGCTGGTTTAGGAGACCTGCCTCCTCGCT--TTCGT 358419 Query 47677 AAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAATACCAATTGGTC 47736 |||| | || | ||| || || || |||| ||||| ||||| || | Sbjct 358420 AAGGGAATCTCATCAGAATCAAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGC 358479 Query 47737 TATGAGTTTTATTAGAAAACTCAGCTTCTGGTAATGGATATTTGTTTATATCTATAATTT 47796 ||| | ||| || | || ||||| | ||||| | || || || ||||| | Sbjct 358480 GATGCCTCAAATTTGATTTCCGGGCCTCTGGCAGGGGATAATAATTGATGTCAATAATCT 358539 Query 47797 TATTTAGANNNNNNNNNNNNNNNNNNACAATTTCTCTTAATTTATTAAAATCAAA---CT 47853 |||| ||| | || | | ||| ||||| || | || Sbjct 358540 TATTCAGATTCTTAGCCACTGTCTTAGTGACCTCCTTCAGTTTCTTAAAGTCGTACGTCT 358599 Query 47854 TGTTATTTATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCAT 47913 | | | | || ||| | || || || || ||||| || || || || || | || | Sbjct 358600 TCTCAGGGGTCACGAACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGGCGATTTCGT 358659 Query 47914 TTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAAT 47973 || | ||| | | ||||| | || ||||||| || ||||| || || | || Sbjct 358660 CGGGCGACGAATACTCAACGATTTCTGTGCAAAGATTACTGCACTTGATGGTGCCAACAT 358719 Query 47974 TTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTT 48033 | || ||||| | |||| ||||| |||||| | |||||| |||| | ||||| | Sbjct 358720 TCTGCTGATTGCTCTTCCTGTTGCATGCATCCTTGAACAGCATATAAGGATTGCCAGTCT 358779 Query 48034 CTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTATAACAGCTC---TAG 48090 | | ||| | |||||||| | ||| | | | ||||| |||| | | | | Sbjct 358780 CCACCTGCGCCTCAATGATGGCGAACCACAGGGACTGAGCCT---TAACCGTCCGATTGG 358836 Query 48091 CTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTAT 48150 |||| || |||||||| || || | |||||||| || || | |||| | Sbjct 358837 CTTTTCCTTCGGCCTCGTATTTGAGGTACAATTGGTCAAATTCGTCGCCCCAAACATCCT 358896 Query 48151 CTAACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAG 48210 | || ||||| | | || ||||||| ||||| | ||||| | || | Sbjct 358897 GCAGGCCGGGACACTTGTGCGGGCACATCAGCGACCAGTTCTCATTTGCCTCAACGCGCT 358956 Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 ||||||| | ||| |||||||| || || ||||||||| | || | ||||| | Sbjct 358957 TCATAAAGAGATCAGGTATCCAGAGGGCATAAAATAAATCGCGAGCACGATTCTCTTCCT 359016 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | || | ||| | || ||||| | || || | | ||| | |||||| || || || | Sbjct 359017 TACCGGTGTTCTTCTTCAGTTCCAAGAATTCAAAAACATCGGAATGCCAGGGCTCCAAGT 359076 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | || || | | || || || || || || ||||| | || | || ||||| Sbjct 359077 AGATGGCAAAGGCGCCAGGGCGCTTGCCGCCACCCTGATCCACGTAACGCGCTACATTGT 359136 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCC 48439 | | |||| | ||| || || | ||||| || | ||||| || || Sbjct 359137 TGAAGACTCGCAGCATGGGAACGAGGCCATTGGAGGTCCCATTCGTGCC 359185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562099272255840