Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_018283.1 Length=58065 Score E Sequences producing significant alignments: (Bits) Value seq1335 242 1e-59 seq2 242 1e-59 >seq1335 Length=113529 Score = 242 bits (268), Expect = 1e-59 Identities = 617/925 (67%), Gaps = 23/925 (2%) Strand=Plus/Minus Query 15339 TTTGGGCAAGGCCGTCCAATGGTGGCGCAAACCATGTCCCAAATAATGCAGCCG-TCCAC 15397 ||||||||||| | ||||| || ||||||||||| ||||| | | ||| || ||||| Sbjct 40912 TTTGGGCAAGGTCTACCAATTGTCGCGCAAACCATATCCCACAACA-GCACCCCATCCAC 40854 Query 15398 CAGTTCTTGCCGTGTAATGATCTCGGTGGAAAGGCGCGTGTGGATACCCGACCATGCGTT 15457 | | | ||| | ||| || || | | ||| || ||||| || |||||||| ||||| Sbjct 40853 TCGCTGGTTCCGCGCAATCATTTCAGCGCTAAGACGTGTGTGAATGCCCGACCAAGCGTT 40794 Query 15458 ATGCCTCGGGTCTGCGCCGGGATTCGTGCAGACGCTCCAAACGATGAATTCATTTGCATT 15517 | || ||||| || ||||| | |||| ||||| | | || |||| || Sbjct 40793 TCGTTGAGGATCTGCACCAGGATTGGAACAGATACTCCAGATCACAAACTCATCAGCGAG 40734 Query 15518 CGCCGGACGCTGAAAGATGTTCGTGTTGTTGCCATCCAAGCAACCCTTTAGCTCGATGAC 15577 | ||| || | ||| || |||||||| || ||||| | || ||||| || || || || Sbjct 40733 TGGCGGTCGTTCAAAAATATTCGTGTTATTCCCATCAAGACAGCCCTTAAGGTCAATAAC 40674 Query 15578 AGCGACACGATCTG-ATGGAAGCGTCACGGAATAATCGTGCCGGTTGGC-TTCGCCGGAT 15635 ||| ||||| | || | || || |||||| | ||||| || || | | Sbjct 40673 AGCAACACGTCCACTATTTAGACGA-ACAATATAATCATTACGGTTTGCATTATCTGTCA 40615 Query 15636 GACTCCCACTCTTTGATGAAGTGGTTATCCTGCATATAGTTTAGGACGCGCTGAACAAAC 15695 || ||||| | || || | || | ||||| || || | ||||||||||| Sbjct 40614 GA-TCCCATCCAGCAATAAAACCGCCGTCTTCCATATGATTCAGCGCATGCTGAACAAAC 40556 Query 15696 TCCCGCTTCTCACGCATGGTAGCTGAGAACTGGCCGCGAATGCGTTCGATAGCGCCCCGA 15755 || || || ||||||| || || || |||||||| || | || || || ||||| ||| Sbjct 40555 TCTCGTTTGCCACGCATAGTGGCCGAAAACTGGCCACGGACACGCTCTATCGCGCCACGA 40496 Query 15756 AACACGCCACTATTATAGAATTC-CGCTTCGCCTAAGCCGTGAAGGCCGAGCTTATGGCC 15814 |||| ||| | |||||| || ||| || | || || || ||| || ||||| | Sbjct 40495 AACAAACCAGACTGATAGAACTCTCGC-TCATCCAAACCATGGTCGCCAAGTTTATGCGC 40437 Query 15815 TTCAGCCTTCAGCACATCTGAATACTCTTCGATCTTTTTCCGCAATTCAGCGTTCTGCTC 15874 ||| | || || | || | | || ||||| | | |||||| | |||||| | Sbjct 40436 TTCTGTTTTAAGTATTTCAGCAAACCTCTCGATTTGATCGCGCAATCCCTTGTTCTGTTT 40377 Query 15875 GCACGGAATGATATTCATGCGGCGACCT-TTGCCGACGTTGGA----CTTCCAAGAATTC 15929 || ||||| || |||||| || ||| || || | | ||| | ||||| | Sbjct 40376 ACAGGGAATAATGGTCATGCCGCTTCCTGTTTCC--CTTCGGAAACCATGCCAAGTAACG 40319 Query 15930 GCTCAAAAAGATGATGAGCCAAATGGCGGACTACGGGAACGACCACACCATCGCCGGTCA 15989 | || | | ||| || |||| ||| || || || || || | || ||||| || |||| Sbjct 40318 GTTCCAGGATATGCTGCGCCAGATGACGAACGACAGGCACAGCTACGCCATCCCCTGTCA 40259 Query 15990 GGTGGTACGCCTCGTTGTAGTTCTCAGGGAGCTTGTAATCGTCAGGCAAGCCCATGAGGC 16049 |||| || || || || || |||| ||| |||||||||| || | ||||| || | Sbjct 40258 GGTGATAAGCTTCATTATAATTCTTAGGCAGCTTGTAATGATCTCCGAGCCCCATCAGCC 40199 Query 16050 GCGCCGTTTCGCGACTAGATATCAGGCGAGAGCGAACCTTGTCACGTTGCACAACTAAGA 16109 || ||||| ||| | || || || || || |||||||| | | ||||| | | Sbjct 40198 TTGCTGTTTCACGAGTGGAGATTAGCCGCGACCGAACCTTCCGGCCGTCAACAACAATAA 40139 Query 16110 TTGACTGCCGACTTGAACCGCCAGCCGGAGTGCGGAGACAACCCGAGATATCATCAAATC 16169 ||| ||| || |||||||| || ||||| || || |||||||| | |||||| ||||| | Sbjct 40138 TTGTCTGACGGCTTGAACCCCCTGCCGGCGTCCGAAGACAACCTGCGATATCGTCAAACC 40079 Query 16170 GAATTTCCGCGCGCTGCACCTT----GCGTTTGAATTCGTCGAGACGTGTGCGCTTGTAA 16225 | | ||| || ||||| || || |||| ||| || |||||||| || | || Sbjct 40078 GCACTTCAGCACGCTGAACTTTCGCCCCGTT----TTCATCAAGACGTGTTCGTCTATAG 40023 Query 16226 ATTCCGCCAACCATGCGCTTGGCCG 16250 || | || ||||| ||| || ||| Sbjct 40022 ATGGCTCCCACCATACGCCTGCCCG 39998 >seq2 Length=32658 Score = 242 bits (268), Expect = 1e-59 Identities = 617/925 (67%), Gaps = 23/925 (2%) Strand=Plus/Minus Query 15339 TTTGGGCAAGGCCGTCCAATGGTGGCGCAAACCATGTCCCAAATAATGCAGCCG-TCCAC 15397 ||||||||||| | ||||| || ||||||||||| ||||| | | ||| || ||||| Sbjct 18264 TTTGGGCAAGGTCTACCAATTGTCGCGCAAACCATATCCCACAACA-GCACCCCATCCAC 18206 Query 15398 CAGTTCTTGCCGTGTAATGATCTCGGTGGAAAGGCGCGTGTGGATACCCGACCATGCGTT 15457 | | | ||| | ||| || || | | ||| || ||||| || |||||||| ||||| Sbjct 18205 TCGCTGGTTCCGCGCAATCATTTCAGCGCTAAGACGTGTGTGAATGCCCGACCAAGCGTT 18146 Query 15458 ATGCCTCGGGTCTGCGCCGGGATTCGTGCAGACGCTCCAAACGATGAATTCATTTGCATT 15517 | || ||||| || ||||| | |||| ||||| | | || |||| || Sbjct 18145 TCGTTGAGGATCTGCACCAGGATTGGAACAGATACTCCAGATCACAAACTCATCAGCGAG 18086 Query 15518 CGCCGGACGCTGAAAGATGTTCGTGTTGTTGCCATCCAAGCAACCCTTTAGCTCGATGAC 15577 | ||| || | ||| || |||||||| || ||||| | || ||||| || || || || Sbjct 18085 TGGCGGTCGTTCAAAAATATTCGTGTTATTCCCATCAAGACAGCCCTTAAGGTCAATAAC 18026 Query 15578 AGCGACACGATCTG-ATGGAAGCGTCACGGAATAATCGTGCCGGTTGGC-TTCGCCGGAT 15635 ||| ||||| | || | || || |||||| | ||||| || || | | Sbjct 18025 AGCAACACGTCCACTATTTAGACGA-ACAATATAATCATTACGGTTTGCATTATCTGTCA 17967 Query 15636 GACTCCCACTCTTTGATGAAGTGGTTATCCTGCATATAGTTTAGGACGCGCTGAACAAAC 15695 || ||||| | || || | || | ||||| || || | ||||||||||| Sbjct 17966 GA-TCCCATCCAGCAATAAAACCGCCGTCTTCCATATGATTCAGCGCATGCTGAACAAAC 17908 Query 15696 TCCCGCTTCTCACGCATGGTAGCTGAGAACTGGCCGCGAATGCGTTCGATAGCGCCCCGA 15755 || || || ||||||| || || || |||||||| || | || || || ||||| ||| Sbjct 17907 TCTCGTTTGCCACGCATAGTGGCCGAAAACTGGCCACGGACACGCTCTATCGCGCCACGA 17848 Query 15756 AACACGCCACTATTATAGAATTC-CGCTTCGCCTAAGCCGTGAAGGCCGAGCTTATGGCC 15814 |||| ||| | |||||| || ||| || | || || || ||| || ||||| | Sbjct 17847 AACAAACCAGACTGATAGAACTCTCGC-TCATCCAAACCATGGTCGCCAAGTTTATGCGC 17789 Query 15815 TTCAGCCTTCAGCACATCTGAATACTCTTCGATCTTTTTCCGCAATTCAGCGTTCTGCTC 15874 ||| | || || | || | | || ||||| | | |||||| | |||||| | Sbjct 17788 TTCTGTTTTAAGTATTTCAGCAAACCTCTCGATTTGATCGCGCAATCCCTTGTTCTGTTT 17729 Query 15875 GCACGGAATGATATTCATGCGGCGACCT-TTGCCGACGTTGGA----CTTCCAAGAATTC 15929 || ||||| || |||||| || ||| || || | | ||| | ||||| | Sbjct 17728 ACAGGGAATAATGGTCATGCCGCTTCCTGTTTCC--CTTCGGAAACCATGCCAAGTAACG 17671 Query 15930 GCTCAAAAAGATGATGAGCCAAATGGCGGACTACGGGAACGACCACACCATCGCCGGTCA 15989 | || | | ||| || |||| ||| || || || || || | || ||||| || |||| Sbjct 17670 GTTCCAGGATATGCTGCGCCAGATGACGAACGACAGGCACAGCTACGCCATCCCCTGTCA 17611 Query 15990 GGTGGTACGCCTCGTTGTAGTTCTCAGGGAGCTTGTAATCGTCAGGCAAGCCCATGAGGC 16049 |||| || || || || || |||| ||| |||||||||| || | ||||| || | Sbjct 17610 GGTGATAAGCTTCATTATAATTCTTAGGCAGCTTGTAATGATCTCCGAGCCCCATCAGCC 17551 Query 16050 GCGCCGTTTCGCGACTAGATATCAGGCGAGAGCGAACCTTGTCACGTTGCACAACTAAGA 16109 || ||||| ||| | || || || || || |||||||| | | ||||| | | Sbjct 17550 TTGCTGTTTCACGAGTGGAGATTAGCCGCGACCGAACCTTCCGGCCGTCAACAACAATAA 17491 Query 16110 TTGACTGCCGACTTGAACCGCCAGCCGGAGTGCGGAGACAACCCGAGATATCATCAAATC 16169 ||| ||| || |||||||| || ||||| || || |||||||| | |||||| ||||| | Sbjct 17490 TTGTCTGACGGCTTGAACCCCCTGCCGGCGTCCGAAGACAACCTGCGATATCGTCAAACC 17431 Query 16170 GAATTTCCGCGCGCTGCACCTT----GCGTTTGAATTCGTCGAGACGTGTGCGCTTGTAA 16225 | | ||| || ||||| || || |||| ||| || |||||||| || | || Sbjct 17430 GCACTTCAGCACGCTGAACTTTCGCCCCGTT----TTCATCAAGACGTGTTCGTCTATAG 17375 Query 16226 ATTCCGCCAACCATGCGCTTGGCCG 16250 || | || ||||| ||| || ||| Sbjct 17374 ATGGCTCCCACCATACGCCTGCCCG 17350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185683409984744