Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq185 257 3e-63 seq991 149 1e-30 >seq185 Length=662383 Score = 257 bits (284), Expect = 3e-63 Identities = 558/825 (68%), Gaps = 15/825 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | |||||||| ||||| ||||| || |||| |||||| |||| Sbjct 113993 CTGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTC 114052 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||| ||||| ||||| || | | | ||||| || | ||||| Sbjct 114053 CATGAAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAG 114112 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | |||| || || |||| ||||| | ||||| ||| | ||||||||| || || Sbjct 114113 GCGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATT 114172 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 |||||||| || | || | ||||||| || || | ||| || || | | |||| Sbjct 114173 CACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCTC 114232 Query 48079 CTTAACGCGGGACTCT-GAGG-GTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCAG-G 48134 | | ||| ||| || | | | | ||| | || |||| | | | || ||| | Sbjct 114233 GATGATGCG---CTCGCGACGCGGTCGCTGCACCAGATGCTGGA---ACATCA-GCACCG 114285 Query 48135 CAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAG 48194 ||||||| | ||||| || ||||| ||| ||||||| ||||||||||| || |||| Sbjct 114286 CAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAG 114345 Query 48195 GCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGC 48254 |||| | || | || || ||||||||||| | || || ||| ||||||||||| Sbjct 114346 GCATCAGGCCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAAGAAGATGC 114405 Query 48255 CCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCC 48314 |||| || || || || || ||| || |||||| || || |||| ||||||| Sbjct 114406 CCTCGACGGCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGGAGGAGATCC 114465 Query 48315 AGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA 48374 |||| || |||||||| || || ||| | ||||| ||||| ||||| || | Sbjct 114466 AGGACAGGGCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACA 114525 Query 48375 GCTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | | | | || | |||| ||| | || || || |||| ||||||||| Sbjct 114526 GGTAGTCCCGCTGA--TGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTC 114583 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 || || || ||||| || ||||||||||| || |||||| | |||||| | ||| Sbjct 114584 CGAATGGACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTG 114643 Query 48493 CACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAA 48552 ||| || ||| | ||| | ||| ||||| ||||| || ||||| || || ||||| Sbjct 114644 CACCTCCTGACTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAA 114703 Query 48553 GAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTG 48612 ||| || || ||||| | |||||| || |||| | | || || |||| | Sbjct 114704 GAACGCCAGCACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGT 114763 Query 48613 TACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 || || ||| ||| ||||| |||||||| ||||| ||||| || Sbjct 114764 TAAATCCTTGGACAGATCCACCTCTTCCACGGTCCAAAAGGAGGC 114808 >seq991 Length=691118 Score = 149 bits (164), Expect = 1e-30 Identities = 800/1252 (64%), Gaps = 66/1252 (5%) Strand=Plus/Plus Query 212900 CAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCC-TCCTCTGGTAAAAGTTTG 212958 |||||| |||| || | |||||| || || ||||| || | || | | || | |||| Sbjct 358052 CAGGTGGTGGTTAACCACCTGGAATTCGCCGGAGAGAACGCGTCGTGTA-TAGATATTTG 358110 Query 212959 AAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCA 213018 ||||| ||||||| | ||||| || |||| ||||| |||||| || || |||| Sbjct 358111 TGGTGTACGGCTCGAAGGATTCGTTATTGCCCATTATCTGGGCAGTGGATGCCGTTGGCA 358170 Query 213019 TGGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGA-AGCTCT 213077 |||| || ||||| ||| |||||| || || || | ||| | | || |||| Sbjct 358171 TGGGGGCGACCAGCAGAGAGTTCCTGACACCATGTTTCTTGATC-GACTCCTTCAGCTTG 358229 Query 213078 GCCCAGTCCCATCTGCCAGACAGGTCCTCGTCCTTCACGTTCCACATGTCAAACTGCAAG 213137 ||||||||||| | | || ||| |||| ||||| || |||| | Sbjct 358230 GCCCAGTCCCAGAGGTTCGTTGGGACCTTGTCC---------CACATATCGTACTGAAGA 358280 Query 213138 ATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGC 213197 || || ||||| ||||| ||||||| ||| | || || || | ||| |||||| Sbjct 358281 ATTCCCTTGCTTACGGGACTGCCCTCGTATGTTTCATACGGACCTTCGGCCTGGGCCAGT 358340 Query 213198 TCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAG---- 213253 || || || | ||| || | || ||||| |||||||| |||| | ||| || Sbjct 358341 TCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCAAAGATCTGCTGGTTTAGGAGA 358400 Query 213254 -CTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAGCC 213312 || | | |||| | ||| ||||| ||| |||| | || ||||||| | | Sbjct 358401 CCTGCCT--CCTC-GCTTTCGT-AAGGGAATC-TCATCAGAATCAAGGCATCAGCAAAAC 358455 Query 213313 CCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAAGG 213372 |||| | || ||||| ||||| | || |||| || || || | ||| || || Sbjct 358456 CCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGATTTCCGGGCCTCTGGCAGGG 358515 Query 213373 GGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACT---TTGGTGACAT 213429 | ||| | ||| ||| || ||||| || || || | |||||| || ||||| | Sbjct 358516 GATAATAATTGATGTCAATAATCTTATTCAGATTCT---TAGCCACTGTCTTAGTGACCT 358572 Query 213430 GGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTG---CACAAACTCAGGCAGGG 213486 ||| | || | || |||| | || | ||| ||| || | Sbjct 358573 CCTTCAGTTTCT------TAAAGTCGTACGTCTTCTCAGGGGTCACGAACATGTTGAGAG 358626 Query 213487 CGATGCTGGCCAGGTTGCAAACGGCCACCTCCT-GAGAGTCTGTGTACTCCATGATCTCG 213545 ||||| ||||||||||||||||| | || | | | | | | ||||| | ||| || Sbjct 358627 CGATGGATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGAC-GAATACTCAACGATTTCT 358685 Query 213546 GTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCA 213605 ||||| || || ||||| ||||||||| | ||||| || || ||| |||| Sbjct 358686 GTGCAAAGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCAT 358745 Query 213606 GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTC 213665 | ||||||| | ||||| || || || ||||| | ||| | | | | || | | Sbjct 358746 GCATCCTTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTCAATGATGGCGAAC 358805 Query 213666 CAGAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCG 213725 || ||| || ||||| ||| ||| || | ||| || |||||||| | | Sbjct 358806 CACAGGGACTGAGCCTTAACCGTCCGATTGGCTTTTCCTT-CG--GCCTCGTATTTGAGG 358862 Query 213726 TAGAGCTCGTTGAATTCGTGGCCCCAGAC--CCTGTCCAGTCCCGGACAGGA-TGCGGGA 213782 || | | || ||||||| |||||| || |||| ||| || ||||| |||||| Sbjct 358863 TACAATTGGTCAAATTCGTCGCCCCAAACATCCTG--CAGGCCGGGACACTTGTGCGGG- 358919 Query 213783 CACATGAGGCTCCAGTCCCCGTCATCT--CTGA-CTCTCTGCATGAACAGGTCCGGGACC 213839 ||||| || ||||| | |||| | || | | | || ||| || || || || | | Sbjct 358920 CACATCAGCGACCAGTTC---TCATTTGCCTCAACGCGCTTCATAAAGAGATCAGGTATC 358976 Query 213840 CACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGA 213899 || || || || | || | | | |||| ||| || | ||| || ||| Sbjct 358977 CAGAGGGCATAAAATAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCTTCTTCAGT 359036 Query 213900 TCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGC 213959 || | || ||||| | || | ||||| ||||||| |||||||||||||||||| || Sbjct 359037 TCCAAGAATTCAAAAACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGGCGCCAGGG 359096 Query 213960 CTCTTGCCG---CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGT 214016 | ||||||| ||||| ||||| | || || ||||||||| ||||| | ||| Sbjct 359097 CGCTTGCCGCCACCCTGATCCACGTAACGCGCTACATTGTTGAAGACTCGCAGCATGGGA 359156 Query 214017 ACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGTTG 214076 || || || ||||| || || || || ||| | | ||| ||| | || || Sbjct 359157 ACGAGGCCATTGGAGGTCCCATTCGTGCCACATATCGAGGTGCCCTTGGCAC---GGATG 359213 Query 214077 CTCATGGA----GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAG 214124 | ||||| || || ||||| || || ||||||| |||||||| ||| Sbjct 359214 C-AATGGACATTCAGGCCAATGCCGCCCGCCGACTTGGAAATCATGGCACAG 359264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931517010519040