Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq185 187 5e-42 seq991 150 3e-31 >seq185 Length=662383 Score = 187 bits (206), Expect = 5e-42 Identities = 531/816 (65%), Gaps = 17/816 (2%) Strand=Plus/Minus Query 25513 TGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTA-CGCTCTATCCAA 25571 ||||||| |||||| | |||||| ||||||| | || |||| | ||| || | Sbjct 114799 TGGACCGTGGAAGAGGTGGATCTGTCCAAGGATTTAACCGACTGGCATCGCCTTAAGGAT 114740 Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631 ||||| | ||||| || | ||| |||| |||||||| ||||| ||||| || || Sbjct 114739 -GACGAACGTCATTTCATCTCCCATGTGCTGGCGTTCTTTGCCGCCTCCGATGGCATCGT 114681 Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691 |||||||| ||| |||| | |||| ||| |||||| | |||||| || || Sbjct 114680 CAACGAGAACCTGGTCGAGCGTTTCAGTCAGGAGGTGCAGATCACAGAGGCCCGCTGCTT 114621 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 ||| || |||||||| ||||| || || || || || ||| |||| || | ||||| Sbjct 114620 CTATGGCTTCCAGATCGCCATGGAGAACGTCCATTCGGAGATGTA---CAGTGTGCTGAT 114564 Query 25752 GACGTACA-TTACAGACGTCG-CCG----AGAGAGATCGGCTGTTTGGTGCCATCGAGCA 25805 || ||| ||||| || ||| || | || |||||| |||||||||| Sbjct 114563 --CG-ACACTTACATCCGGGATCCGCATCAGCGGGACTACCTGTTTAATGCCATCGAGAC 114507 Query 25806 CATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGC 25865 ||| || | ||| | || || |||||| || |||||| | | || || Sbjct 114506 CATGCCGGCGGTGAAGCGCAAAGCTGACTGGGCCCTGTCCTGGATCTCCTCCAAGTCTGC 114447 Query 25866 TACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTC 25925 | ||||| |||||| | | || ||||| || || ||||||||||| |||||||| Sbjct 114446 CAACTTTGGAGAGCGGATCATTGCATTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGCAG 114387 Query 25926 GTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAA 25985 ||||| | || |||||||| ||| || || ||||| || ||| ||| ||||| Sbjct 114386 CTTTGCCTCTATTTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTGACCTTCTCCAA 114327 Query 25986 CGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGG 26045 |||||||||| | | ||||||||||| ||| | || ||||| ||| | | | | Sbjct 114326 CGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCGGTGCTGATGTTCCAG-- 114269 Query 26046 CCACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGA 26105 || || | || ||| || ||| | || | ||||| || |||||||| Sbjct 114268 -CATCTGGTGCAGCGACCGCGTCGCGAGCGCATCATCGAGATCATTCGTGACGCTGTGGA 114210 Query 26106 GATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAG 26165 || || ||||||| | ||||||||| | Sbjct 114209 CATTGAACAGGAGTTCTTGACCGATGCCCTGCCCGTGAATCTGATCGGCATGAACTGCGA 114150 Query 26166 ACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGC 26225 || ||| || |||||||||| |||||| || | ||||| | || |||| | | Sbjct 114149 CCTAATGTCGCAGTACATTGAGTTTGTGGCTGATCGCCTGCTCGTCGAGTTGGGCGTTGG 114090 Query 26226 CAGACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAA 26285 | | |||||| || ||||||||| |||| ||||| | || ||| |||| || || Sbjct 114089 AAAAATCTACAACACCAAGAACCCGTTCAACTTCATGGAGATGATCTCGCTGGACGGCAA 114030 Query 26286 GACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||||| ||||| |||| ||| ||||| || || Sbjct 114029 GACCAACTTTTTTGAGAAGAAGGTGGGCGAGTACCA 113994 >seq991 Length=691118 Score = 150 bits (166), Expect = 3e-31 Identities = 364/543 (67%), Gaps = 11/543 (2%) Strand=Plus/Plus Query 221714 GCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGG 221773 |||||||| || ||||| | ||||| | ||||| | ||| ||||| || || Sbjct 358635 GCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAATACTCAACGATTTCTGTGCAAAGA 358694 Query 221774 TTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTG 221833 || |||||||||||||| || | | | ||||| ||| | ||| || |||||| Sbjct 358695 TTACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCATGCATCCTTG 358754 Query 221834 TAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCT 221893 | |||||| | ||| ||||||||||| ||| ||| | | || | ||| || Sbjct 358755 AACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTCAATGATGGCGAACCACAGGGA- 358813 Query 221894 CTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCAT 221952 ||| || | ||||||| ||| || || |||| || | || |||| | || Sbjct 358814 CTGAGCCTTAACCGTCCGATTGGCTTTTCCTTCGGCCTCGT-ATTTGAGGTACA----AT 358868 Query 221953 --GTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGGACACATCAG 222009 |||||| | || || | | || | |||||| |||||| || ||||| |||||||| Sbjct 358869 TGGTCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACACTTGTGCGGG-CACATCAG 358927 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 ||||| || || | | || | || ||| ||||| || || ||||| || || | Sbjct 358928 CGACCAGTTCTCATTTGCCTCAACGCGCTTCATAAAGAGATCAGGTATCCAGAGGGCATA 358987 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 ||| | ||| | | || | ||| ||| ||| |||| ||| |||| ||||| || || Sbjct 358988 AAATAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCTTCTTCAGTTCCAAGAATTC 359047 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 ||||| || | ||||| ||||||| |||| ||| | ||||| || |||||| ||| Sbjct 359048 AAAAACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGGCGCCAGGGCGCTTGCCGCC 359107 Query 222190 ACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249 |||||||||||| | | | | | |||||||| || || | || || || || || Sbjct 359108 ACCCTGATCCACGTAACGCGCTACATTGTTGAAGACTCGCAGCATGGGAACGAGGCCATT 359167 Query 222250 GGA 222252 ||| Sbjct 359168 GGA 359170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928829056080640