Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1255 152 3e-31 seq991 118 7e-21 seq1117 96.9 2e-14 seq98 95.1 8e-14 seq1254 86.0 4e-11 >seq1255 Length=5079760 Score = 152 bits (168), Expect = 3e-31 Identities = 368/548 (67%), Gaps = 8/548 (1%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 ||||||||||||| || || || ||| || || | || | || |||| || || | Sbjct 1948723 TTGGTATTGATTTGGGCACCACCTACTCGTGCGTGGGAGTGTTCCAGCATGGCAAGGTCG 1948782 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 | || || || || ||||| |||||| | || |||||||| |||||| | || || || | Sbjct 1948783 AGATCATCGCTAACGACCAGGGTAATCGTACCACACCATCCTATGTTGCCTTCACCGATA 1948842 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | || | ||| || || ||||| || || | || | || || || | || | Sbjct 1948843 CGGAGCGTCTGATCGGCGATGCCGCCAAGAACCAGGTGGCGATGAACCCGACCCAGACGA 1948902 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 | || ||||| || | | ||||| || || || ||||| || | || || || || | Sbjct 1948903 TCTTCGATGCCAAGCGTCTCATTGGCCGCAAGTTCGATGACTCCGCCGTGCAGTCGGACA 1948962 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGCAA--T 474630 || || ||||| || ||||| | | |||| |||||| || | || || | | | Sbjct 1948963 TGAAGCACTGGCCCTTCGAGGTGGTCAGCGTTGATGGTAAGCCCAAGATTGAGGTGACTT 1949022 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | | | | || | || | ||| || || | || || || ||||| | |||| Sbjct 1949023 ACAAGGACGAG-AAGAAGACCTTCTTC-CCCGAGGAGATCTCCTCGATGGTGCTCACCAA 1949080 Query 474691 AATGAAACAAACCG-CGAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTACT 474748 ||||| | || | |||| | |||| ||| ||||| || || | || || || || Sbjct 1949081 GATGAAGGAGACTGCCGAG-GCCTATC-TGGGCAAGACTGTGACCAACGCGGTCATCACC 1949138 Query 474749 GTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCA 474808 || || || || || || || || || ||||| || || || ||||| |||| || || Sbjct 1949139 GTGCCGGCCTACTTCAACGACTCCCAGCGTCAGGCCACCAAGGATGCCGGAACCATCGCC 1949198 Query 474809 GGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTT 474868 ||||| ||||| | ||||| ||||| || || || || || || |||| |||||||| Sbjct 1949199 GGTCTGAATGTGCTTCGTATCATTAACGAGCCCACGGCTGCGGCTATTGCCTATGGTCTG 1949258 Query 474869 GATAAGAA 474876 || ||||| Sbjct 1949259 GACAAGAA 1949266 >seq991 Length=691118 Score = 118 bits (130), Expect = 7e-21 Identities = 161/221 (73%), Gaps = 4/221 (2%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAA--GTGTACTTTCTTTAGAAACATTATAATCAGCTAGA 480608 |||||| ||||| || | ||| | ||| ||| ||| ||| ||||| |||| || Sbjct 450722 ACGAAGGCGGAGCACCAAATGCAAGGTGGACTC-CTTCTGAATG-TTATAGTCAGAGAGG 450665 Query 480609 GTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATT 480668 || | | |||||| || ||||| |||||||| || ||||| || ||||| ||||||||| Sbjct 450664 GTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATT 450605 Query 480669 CCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCA 480728 ||||| ||||| |||||||| ||||||| ||| ||||| || | || ||| Sbjct 450604 CCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCA 450545 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || || || || ||||| ||||| ||||| || || Sbjct 450544 AGAGTGATGGTCTTGCCCGTGAGGGTCTTCACGAAGATCTG 450504 >seq1117 Length=387944 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||||||||| || || || || || || || | ||||| Sbjct 175063 ACGGAGACGGAGCACAAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 175122 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || |||||||| || |||||||| ||||| || ||||| ||||| ||||| Sbjct 175123 ACGTCCATCCTCCAGTTGCTTGCCGGCAAAAATGAGACGCTGCTGATCTGGAGGGATTCC 175182 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||| ||||| || ||| || || || || | | | | | ||| Sbjct 175183 CTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAA 175242 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || |||||||| ||||| || || Sbjct 175243 -AGTAATGGTCTTGCCAGTAAGAGTCTTCACGAAGATCTG 175281 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||||||||| || || || || || || || | ||||| Sbjct 175747 ACGGAGACGGAGCACAAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 175806 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| || || || || || |||||||| ||||| || ||||| ||||| ||||| Sbjct 175807 GCGTCCATCCTCCAGCTGTTTGCCGGCAAAAATGAGACGCTGCTGATCTGGAGGGATTCC 175866 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||| ||||| || ||| || || || || | | || || Sbjct 175867 CTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAG 175926 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || ||||||||||| ||||| || || Sbjct 175927 GGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTG 175965 >seq98 Length=20832 Score = 95.1 bits (104), Expect = 8e-14 Identities = 156/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||||||||| || || || || || || || | ||||| Sbjct 9350 ACGGAGACGGAGCACAAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGT 9409 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAA-TAAGACGTTGTTGATCAGGAGGAATTC 480669 | ||| || |||||||| || ||||||| | ||||| || ||||| ||||| |||| Sbjct 9410 ACGTCCATCCTCCAGTTGCTTGCCGGCAAAAAATGAGACGCTGCTGATCTGGAGGGATTC 9469 Query 480670 CTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCA 480728 | ||||||||||| ||||| || || ||||| || || | | | | | || Sbjct 9470 CCTCCTTGTCTTGGATCTTAGCCTTAACGTTCTCAATGGTGTCGGAAGGCTCCACCTCCA 9529 Query 480729 AGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | ||||| || || || ||||||||||| ||||| || || Sbjct 9530 A-AGTAATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTG 9569 Score = 86.0 bits (94), Expect = 4e-11 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| || |||||||| || |||||||| ||||| || ||||| ||||| ||||| ||||| Sbjct 10784 ATCCTCCAGTTGCTTGCCGGCAAAAATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTT 10843 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 |||||| ||||| || || ||||| || || | | | | | ||| |||| Sbjct 10844 GTCTTGGATCTTAGCCTTAACGTTCTCAATGGTGTCGGAAGGCTCCACCTCCAA-AGTAA 10902 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || ||||||||||| ||||| || || Sbjct 10903 TGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTG 10936 >seq1254 Length=5769022 Score = 86.0 bits (94), Expect = 4e-11 Identities = 246/374 (66%), Gaps = 6/374 (2%) Strand=Plus/Plus Query 474506 AATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAA 474565 ||||| | |||||||| || | |||||||||| || || || || | | ||||| Sbjct 2593577 AATACGGTGTTTGATGCCAAGCGCCTGATTGGTCGCAAATTCGACGACCCAAAGATCCAA 2593636 Query 474566 TCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA 474625 || || || ||||| || |||||||| || | || || || | || || Sbjct 2593637 GAGGACTTGAAGCACTGGCCCTTCAAGGTGATCAACGACAAGGGCAAGCCCAAAATCGAG 2593696 Query 474626 GC--AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTT 474683 | |||||| | || ||| |||| ||| | ||||| | ||| ||| |||||| Sbjct 2593697 GTGGAATACAAG--GGGGAACGCAAACGCTTTGCTCCGGAGGAGATTAGTTCGATGGTTC 2593754 Query 474684 TAGCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTA 474742 | |||| ||| | | ||| || | ||| | || | | |||| || || || Sbjct 2593755 TGACCAAGATGCGCGAGATCGCCGAAATG-TATTTGGGCGGAAAGGTAAAGGACGCCGTG 2593813 Query 474743 ATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGA 474802 || || || || || || ||||| ||| ||||| || || || || |||||||| Sbjct 2593814 ATCACGGTGCCGGCTTACTTTAACGATAGCCAACGGCAGGCTACCAAGGATGCGGGCTCC 2593873 Query 474803 ATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTAT 474862 ||||| ||||||||||| || | || || || ||||| || || || || | || || Sbjct 2593874 ATTGCGGGTCTTAATGTGCTAAGGATCATCAACGAACCCACGGCTGCTGCCTTGGCCTAC 2593933 Query 474863 GGTCTTGATAAGAA 474876 || || |||||||| Sbjct 2593934 GGACTCGATAAGAA 2593947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268121034580688