Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq71 199 5e-46
seq862 93.3 6e-14
>seq71
Length=15183
Score = 199 bits (220), Expect = 5e-46
Identities = 525/788 (67%), Gaps = 44/788 (6%)
Strand=Plus/Plus
Query 47760 AACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTCTTC 47819
|| |||||| || |||||||| || ||||| ||||| ||||||||||| || | ||
Sbjct 3669 AATAAACTGGCGCACAGAATACTGTACCCCTGTTGCAATTACAAAATCATCTGGCTGCTC 3728
Query 47820 TTGTTGAAGCATTAACCACATAGCCT-CG-ACATAATCTCTGGCATGTCCCCAGTCACGA 47877
|||||| ||||| | ||| | || | || || |||||| | ||||| |||||||||||
Sbjct 3729 TTGTTGGAGCATCATCCA--TTGCATGCGCACGTAATCTTTTGCATGCCCCCAGTCACGC 3786
Query 47878 AGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAG--AGATTGCTTTTA 47935
|| | | ||| || | || | || | || | ||| ||| | |||| |
Sbjct 3787 AGACTGTTGATATTCCCCATGTACAGGCATTTTTCCAGACCAACAGCAATATTGGCC--A 3844
Query 47936 ATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAA 47995
| | ||||| || || |||||||| ||||||||||| | || |||||| ||||
Sbjct 3845 GCCCACGCGTAATTTTGCGTGTTACAAATGTTTCACCACGACGCGGGCTTTCATGGTTAA 3904
Query 47996 AAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTT--CTTTACTATCCA 48053
| | ||| || ||||||||||||| |||| | ||||| || || | || |||||
Sbjct 3905 ACAAAATCCCGTTACAGGCATACATATCGTAAGCCTCACGGTAATTTACGGTA--ATCCA 3962
Query 48054 GTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGT 48113
||| | || | ||| || ||| | || || || |||| ||||||||| || || |
Sbjct 3963 GTAAGCGTACATTTTAGCCACAGCGTAGGGGCTGCGCGGATGGAAAGGTGTTGTTTCCTT 4022
Query 48114 CTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAAC 48173
|| || || || |||||| || || |||||| || ||||| ||||| | ||| |
Sbjct 4023 TTGCGGTGTTTCCTGCACCAACCCGTATAGTTCAGATGTAGATGCCTGATAAAAACG--C 4080
Query 48174 CCTATCTT--CCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCA 48231
| | || ||| | || || || | || || |||| | || || || || |||
Sbjct 4081 GTTGTTTTACCCAATCCTAGAAAGCGAATGGCTTCTAGCAACCGAAGCGT-CCCATTGCA 4139
Query 48232 TC--TGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCC 48289
|| |||| || ||| || ||||| ||||| ||| |||||| |||||| |
Sbjct 4140 TCCACATCTG--TAGAATATTCTGGCATTTCAAAACTCACCGCCACATGAGACTGTGCGC 4197
Query 48290 CAAGATTATAAATCTCATCTGGTTGAACCTGCTGA-ATAACCCTCACTAAATTTGTAGAG 48348
| || ||||||| ||||||||| || || | |||| | || | | | ||| | | |
Sbjct 4198 CGAGGTTATAAACCTCATCTGGCTGCACGT-CTGACAAAATGCGCGTGAGATTAGAGGTG 4256
Query 48349 TCTGTTAAGTCTCCATAATGCAATTTTA-------ATT-----------GATC---ATAA 48387
|| || || || |||||||||| |||| ||| |||| ||||
Sbjct 4257 TCCGTCAAATCCCCATAATGCAGCTTTAGGCGGCTATTCCCAATATGCGGATCCTGATAA 4316
Query 48388 ATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCA 48447
||| || | || |||||| | ||||||||| || || |||||||| || ||
Sbjct 4317 ATGCCGTCCACTCGGGCTGTATTGAATAAAGAAGCACGGCGCTTGATACCATGTACTTCG 4376
Query 48448 TACCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTG 48507
|| || || | ||||||| ||| || | || || ||||| || || |||| ||| ||
Sbjct 4377 TAACCTTTCCCCAGAAGAAATTCAGCAAGATAAGAGCCATCCTGCCCAGTAACACCCGTA 4436
Query 48508 ATTAAAGC 48515
|| |||||
Sbjct 4437 ATCAAAGC 4444
>seq862
Length=676294
Score = 93.3 bits (102), Expect = 6e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 48075 ACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTT 48134
|||||| || || | ||||||||| ||||| || ||||||| || || ||||||
Sbjct 110336 ACCATATGGCGATCTTGGATAGAATGGTGTCTGTTCGTTCTGTGGGGTTTCCACCACCTT 110395
Query 48135 ACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAA 48194
||||| ||||| ||||| |||||||||| || || || | ||| || || |
Sbjct 110396 GCCATATAGTTCCGAAGTGGAAGCTTGATAGAACCGTACACTCTTTTCTATGCCACACGT 110455
Query 48195 ACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGG 48254
||| | || || || | | || || |||| ||||| || |||||||||||
Sbjct 110456 ACGTATGGCGTCCAGGATGCGAAGAGTTCCTACTGCATCCACCTCGGCAGTATACTCGCT 110515
Query 48255 CATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTC 48305
| ||||| || ||||| || || ||||||| | ||||| || |||||
Sbjct 110516 GAGGTCAAAGGAGACCTTCACGTGGGACTGTGCCGCCAGATTGTAGATCTC 110566
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 665483119869920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |