Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq71 199 5e-46 seq862 93.3 6e-14 >seq71 Length=15183 Score = 199 bits (220), Expect = 5e-46 Identities = 525/788 (67%), Gaps = 44/788 (6%) Strand=Plus/Plus Query 47760 AACAAACTGACGGACAGAATATTGATTTCCTGTGGCAATAACAAAATCATCAGGTTCTTC 47819 || |||||| || |||||||| || ||||| ||||| ||||||||||| || | || Sbjct 3669 AATAAACTGGCGCACAGAATACTGTACCCCTGTTGCAATTACAAAATCATCTGGCTGCTC 3728 Query 47820 TTGTTGAAGCATTAACCACATAGCCT-CG-ACATAATCTCTGGCATGTCCCCAGTCACGA 47877 |||||| ||||| | ||| | || | || || |||||| | ||||| ||||||||||| Sbjct 3729 TTGTTGGAGCATCATCCA--TTGCATGCGCACGTAATCTTTTGCATGCCCCCAGTCACGC 3786 Query 47878 AGTGCATCAAGATTTCCTAGATATAAACAGTCTTGCTTACCTTCAG--AGATTGCTTTTA 47935 || | | ||| || | || | || | || | ||| ||| | |||| | Sbjct 3787 AGACTGTTGATATTCCCCATGTACAGGCATTTTTCCAGACCAACAGCAATATTGGCC--A 3844 Query 47936 ATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAA 47995 | | ||||| || || |||||||| ||||||||||| | || |||||| |||| Sbjct 3845 GCCCACGCGTAATTTTGCGTGTTACAAATGTTTCACCACGACGCGGGCTTTCATGGTTAA 3904 Query 47996 AAAGAATACCACTACAGGCATACATTCCGTATGATTCACGATAGTT--CTTTACTATCCA 48053 | | ||| || ||||||||||||| |||| | ||||| || || | || ||||| Sbjct 3905 ACAAAATCCCGTTACAGGCATACATATCGTAAGCCTCACGGTAATTTACGGTA--ATCCA 3962 Query 48054 GTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGT 48113 ||| | || | ||| || ||| | || || || |||| ||||||||| || || | Sbjct 3963 GTAAGCGTACATTTTAGCCACAGCGTAGGGGCTGCGCGGATGGAAAGGTGTTGTTTCCTT 4022 Query 48114 CTGTGGAGTCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAAC 48173 || || || || |||||| || || |||||| || ||||| ||||| | ||| | Sbjct 4023 TTGCGGTGTTTCCTGCACCAACCCGTATAGTTCAGATGTAGATGCCTGATAAAAACG--C 4080 Query 48174 CCTATCTT--CCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCA 48231 | | || ||| | || || || | || || |||| | || || || || ||| Sbjct 4081 GTTGTTTTACCCAATCCTAGAAAGCGAATGGCTTCTAGCAACCGAAGCGT-CCCATTGCA 4139 Query 48232 TC--TGTCTGACCAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCC 48289 || |||| || ||| || ||||| ||||| ||| |||||| |||||| | Sbjct 4140 TCCACATCTG--TAGAATATTCTGGCATTTCAAAACTCACCGCCACATGAGACTGTGCGC 4197 Query 48290 CAAGATTATAAATCTCATCTGGTTGAACCTGCTGA-ATAACCCTCACTAAATTTGTAGAG 48348 | || ||||||| ||||||||| || || | |||| | || | | | ||| | | | Sbjct 4198 CGAGGTTATAAACCTCATCTGGCTGCACGT-CTGACAAAATGCGCGTGAGATTAGAGGTG 4256 Query 48349 TCTGTTAAGTCTCCATAATGCAATTTTA-------ATT-----------GATC---ATAA 48387 || || || || |||||||||| |||| ||| |||| |||| Sbjct 4257 TCCGTCAAATCCCCATAATGCAGCTTTAGGCGGCTATTCCCAATATGCGGATCCTGATAA 4316 Query 48388 ATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCA 48447 ||| || | || |||||| | ||||||||| || || |||||||| || || Sbjct 4317 ATGCCGTCCACTCGGGCTGTATTGAATAAAGAAGCACGGCGCTTGATACCATGTACTTCG 4376 Query 48448 TACCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTG 48507 || || || | ||||||| ||| || | || || ||||| || || |||| ||| || Sbjct 4377 TAACCTTTCCCCAGAAGAAATTCAGCAAGATAAGAGCCATCCTGCCCAGTAACACCCGTA 4436 Query 48508 ATTAAAGC 48515 || ||||| Sbjct 4437 ATCAAAGC 4444 >seq862 Length=676294 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 48075 ACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCTT 48134 |||||| || || | ||||||||| ||||| || ||||||| || || |||||| Sbjct 110336 ACCATATGGCGATCTTGGATAGAATGGTGTCTGTTCGTTCTGTGGGGTTTCCACCACCTT 110395 Query 48135 ACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAA 48194 ||||| ||||| ||||| |||||||||| || || || | ||| || || | Sbjct 110396 GCCATATAGTTCCGAAGTGGAAGCTTGATAGAACCGTACACTCTTTTCTATGCCACACGT 110455 Query 48195 ACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCGGG 48254 ||| | || || || | | || || |||| ||||| || ||||||||||| Sbjct 110456 ACGTATGGCGTCCAGGATGCGAAGAGTTCCTACTGCATCCACCTCGGCAGTATACTCGCT 110515 Query 48255 CATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTC 48305 | ||||| || ||||| || || ||||||| | ||||| || ||||| Sbjct 110516 GAGGTCAAAGGAGACCTTCACGTGGGACTGTGCCGCCAGATTGTAGATCTC 110566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665483119869920