Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq991 183 4e-41 seq862 91.5 2e-13 >seq991 Length=691118 Score = 183 bits (202), Expect = 4e-41 Identities = 675/1042 (65%), Gaps = 29/1042 (3%) Strand=Plus/Minus Query 75904 GGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAA 75963 ||||||||| | || |||||||| | ||||||||| || |||| |||||| || || | Sbjct 358781 GGAGACTGGCAATCCTTATATGCTGTTCAAGGATGCATGCAACAGGAAGAGCAATCAGCA 358722 Query 75964 GAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAA 76023 |||| | || || |||||| || ||||||||||| ||||| | ||||| | Sbjct 358721 GAATGTTGGCACCATCAAGTGCAGTAATCTTTGCACAGAAATCGTTGAGTATTCGTCGCC 358662 Query 76024 GGATGAGACGGCTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAA---TGA 76080 || || | || |||||||| ||||||| ||||| || | || || | ||| Sbjct 358661 CGACGAAATCGCCGTTTGCAACCTGGCATCCATCGCTCTCAACATGTTCGTGACCCCTGA 358602 Query 76081 AGAGACTCGCACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAA 76140 |||| | || || | | | ||||| | || |||| |||| || | || || Sbjct 358601 GAAGAC--GTAC----GACTTTAAGAAACTGAAGGAGGTCACTAAGACAGTGGCTAAGAA 358548 Query 76141 TCTAAACCGAGTCATTGACAGAAATTTTTATCCCGTTG-AGACTGCGCGAAAGTCTAATA 76199 ||| || | ||||||| |||| ||||||| | ||| || || || || ||| Sbjct 358547 TCTGAATAAGATTATTGACATCAATTATTATCCCCTGCCAGAG-GCCCGGAAATCAAATT 358489 Query 76200 TGCGACACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCC 76259 || | || | || ||||| | || |||| ||| | || |||| || ||| || Sbjct 358488 TGAGGCATCGCCCCATTGGCATTGGCATTCAGGGTTTTGCTGATGCCTTGATTCTGATGA 358429 Query 76260 GCTACGCATTTGATTCAGATGAAGCCAAGGAGA--TGAATGCTCGTATCTTTGAAACCAT 76317 | | | | | || || || || ||| | || | ||||||||||| || Sbjct 358428 GATTCCCTTACGAAAGCGAGGAGGC--AGGTCTCCTAAACCAGCAGATCTTTGAAACTAT 358371 Query 76318 GTATCACGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGAC 76377 ||| | | | ||||| || ||||||||| |||| | ||| ||||| | ||||| || Sbjct 358370 CTATTATGGCGCACTGGAAGCAAGTTGTGAACTGGCCCAGGCCGAAGGTCCGTATGAAAC 358311 Query 76378 ATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGG--AAGGT-GA 76434 || ||||| ||||| | | || | ||||||| |||||||||| ||||| Sbjct 358310 ATACGAGGGCAGTCCCGTAAGCAAGGGAATTCTTCAGTACGATATGTGGGACAAGGTCCC 358251 Query 76435 AACCAAGCTCAACTACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCG 76494 ||| || || || ||||||| || ||||| |||||| | | ||| | | Sbjct 358250 AACGAACCT---CTGGGACTGGGCCAAGCTGAAGGAGTCGATCAAGAAACATGGTGTCAG 358194 Query 76495 TAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAA 76554 ||| ||| || | || || |||||||| || ||||| || || || |||| ||||| Sbjct 358193 GAACTCTCTGCTGGTCGCCCCCATGCCAACGGCATCCACTGCCCAGATAATGGGCAATAA 358134 Query 76555 TGAATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTT 76614 |||| ||| || || ||||| ||||| ||||| || | ||| | || || || Sbjct 358133 CGAATCCTTCGAGCCGTACACCACAAATATCTATACACGACGCGTTCTCTCCGGCGAATT 358074 Query 76615 TGTCATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGA 76674 | || ||| | ||||| | | || || | | || ||| | ||| | || Sbjct 358073 CCAGGTGGTTAACCACCACCTGTTGAGGGATCTGACGGAGCTTGACTTGTGGGATGATGA 358014 Query 76675 TATGAAGGATCTCAT-GGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAG 76733 ||||||| | | || | ||| |||| || ||||| |||||| | ||||| Sbjct 358013 TATGAAGAACCAGATAATTTCCAGC-CGTGGCTCAATTCAGAATATCGAGGCCATCCCCC 357955 Query 76734 ATGATATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACA 76793 | || | |||| ||| || |||||||| ||| | || |||| | | Sbjct 357954 AGCATGTGCGCGATCTGTACAAGACGGTGTGGGAGATCTCCGTCAAGTCCACCATTAAAA 357895 Query 76794 TGGCCGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCA---TGG 76850 |||| || ||||||||| ||||| ||||| |||||| | || ||||| || Sbjct 357894 TGGCTGCGGATCGTGGTGCATTCATCGATCAGAGTCAATCGTTCAA--CATTCATGTTGC 357837 Query 76851 AAAGTCCAACGATGTCCAAGCTCTCTTCTATGCATATGTACGCGTGGAAACAGGGGCTCA 76910 || ||||| ||| |||||| | || || ||| | ||| ||||||| || || | Sbjct 357836 CGAGCCCAACTATG-GCAAGCTGACGTCCATACATTTTTACTCGTGGAAGGCTGGCCTTA 357778 Query 76911 AAACCGGAATGTACTATCTCCG 76932 |||||||||||||||||||||| Sbjct 357777 AAACCGGAATGTACTATCTCCG 357756 >seq862 Length=676294 Score = 91.5 bits (100), Expect = 2e-13 Identities = 224/336 (67%), Gaps = 4/336 (1%) Strand=Plus/Plus Query 177522 CCATGTGATCTCCTTTCCAACCTCTTTGAAGCACATTTCAACAAACTGCCTCACAGAGTG 177581 |||||| |||||| ||| | | ||||| | ||| ||||| | | |||| ||| Sbjct 109927 CCATGTTATCTCCCGTCCGATGTGCTTGAATGCCGCTTCCACAAATTCACGCACACTGTG 109986 Query 177582 TGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCTTCTTGTTGAAGCATGAGCCACAT 177641 ||||| ||||| || | || || || | | || || ||||| | |||||| Sbjct 109987 AGTCTCGCCCGTGGCTATGACGTAGTCTGACGGCGAGTCCCTCTGCAGCATCATCCACAT 110046 Query 177642 GGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTGGCAGCGTTGAGGTTACCGAGTTC 177701 |||||| ||||| || ||||||| ||||| || | | || || || || || || Sbjct 110047 GGCTTCCACATAATCGCTGGCATGTCCCCAATCACGCTTCGAGTCCAGATTGCCTAGCTC 110106 Query 177702 AAGGAACTCTCTCTCACCTTTCACAATTTGTTTGACGC-CATCAG-TAATCTTCTTTGTG 177759 || | |||| ||| ||| ||| | || | | | | || | | || ||| |||| Sbjct 110107 AAAGTACTCCATCTG--CTTCAACAGAATCTTGGCCACACTTCTGGTGATTTTCCTTGTC 110164 Query 177760 ACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGTTGAAGAGGATTCCGGAGCAGGCATAC 177819 ||||| | | || |||| ||| ||||||||||||||||| || |||||| ||| Sbjct 110165 ACAAAATTCTCTCCACGTCGCGGACTCTCGTGGTTGAAGAGGATGCCATTGCAGGCGTAC 110224 Query 177820 ATACCATAGGATTCTCGGTAATTTTTGACGAGCCAG 177855 || |||| || |||||||| |||||| |||| Sbjct 110225 ATGTTGTAGGCCTCCCGGTAATTAATGACGATCCAG 110260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596559488145280