Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq991 96.9 6e-15 seq1117 93.3 8e-14 seq98 93.3 8e-14 >seq991 Length=691118 Score = 96.9 bits (106), Expect = 6e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| |||||| || | ||| || ||| |||||||| || | || | | Sbjct 450715 CGGAGCACCAAATGCAAGGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCA 450656 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || || || ||||| || | | ||| ||||| ||||| ||||||||||| Sbjct 450655 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 450596 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| ||| | |||| ||||| || || | || || || ||||| || Sbjct 450595 TCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATG 450536 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || || || || ||||| || Sbjct 450535 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCATCTT 450498 >seq1117 Length=387944 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | || | ||| || ||| || |||||||| | || | | Sbjct 175070 CGGAGCACAAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGTCCA 175129 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| || ||||||||||| | | ||| ||||| ||||| ||||| || || Sbjct 175130 TCCTCCAGTTGCTTGCCGGCAAAAATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTG 175189 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | ||| || || ||||||| ||| || || | ||| || Sbjct 175190 TCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAAAGTAATG 175249 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || |||||| Sbjct 175250 GTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCATT 175285 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | || | ||| || ||| || |||||||| | || | | Sbjct 175754 CGGAGCACAAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCA 175813 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||| ||||||||||| | | ||| ||||| ||||| ||||| || || Sbjct 175814 TCCTCCAGCTGTTTGCCGGCAAAAATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTG 175873 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | ||| || || ||||||| ||| || || || || || Sbjct 175874 TCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCGGAAGGCTCCACCTCCAGGGTGATG 175933 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || |||||| Sbjct 175934 GTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCATT 175969 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | || | ||| || ||| || |||||||| | || | | Sbjct 177122 CGGAGCACAAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCA 177181 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||| ||||||||||| | | ||| || || || || ||||| || || Sbjct 177182 TCCTCCAGCTGTTTGCCGGCAAAAATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 177241 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||||| || | || ||| || ||||||| ||| || ||||| || || Sbjct 177242 TCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCCACCTCTAGGGTGATG 177301 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || |||||| Sbjct 177302 GTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCATT 177337 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | || | ||| || ||| || |||||||| | || | | Sbjct 178034 CGGAGCACAAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCA 178093 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||| ||||||||||| | | ||| || || || || ||||| || || Sbjct 178094 TCCTCCAGCTGTTTGCCGGCAAAAATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 178153 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||||| || | || ||| || ||||||| ||| || ||||| || || Sbjct 178154 TCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCCACCTCTAGGGTGATG 178213 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || |||||| Sbjct 178214 GTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCATT 178249 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | || | ||| || ||| || |||||||| | || | | Sbjct 179174 CGGAGCACAAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCA 179233 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||| ||||||||||| | | ||| || || || || ||||| || || Sbjct 179234 TCCTCCAGCTGTTTGCCGGCAAAAATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 179293 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||||| || | || ||| || ||||||| ||| || ||||| || || Sbjct 179294 TCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCCACCTCTAGGGTGATG 179353 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || |||||| Sbjct 179354 GTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCATT 179389 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || | ||| || || |||| || | || | ||| || ||| ||||||||| Sbjct 174143 ATTCCTCCGCGCAAACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTATAGTCG 174202 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || ||||| || || || | ||| || || || Sbjct 174203 GACAGGGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGG 174262 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || || ||||||| || | || ||| || ||||||| ||| Sbjct 174263 GGGATTCCCTCCTTGTCCTGGATTTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCC 174322 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || || || || || || || || || || || |||||| Sbjct 174323 ACCTCTAGGGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCATT 174373 >seq98 Length=20832 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | || | ||| || ||| || |||||||| | || | | Sbjct 10497 CGGAGCACAAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCA 10556 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||| ||||||||||| | | ||| || || || || ||||| || || Sbjct 10557 TCCTCCAGCTGTTTGCCGGCAAAAATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 10616 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||||| || | |||| ||| || ||||||| ||| || || | ||| || Sbjct 10617 TCCTGGATTTTGGCCTTCACATTTTCAATGGTGTCGGAAGGCTCCACCTCCAAAGTAATG 10676 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || |||||| Sbjct 10677 GTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCATT 10712 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || ||||| | || | ||| || ||| || |||||||| | || | | Sbjct 11407 CGGAGCACAAGATGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTGCGTCCA 11466 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||| ||||||||||| | | ||| || || || || ||||| || || Sbjct 11467 TCCTCCAGCTGTTTGCCGGCAAAAATGAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTG 11526 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || ||||||| || | |||| ||| || ||||||| ||| || || | ||| || Sbjct 11527 TCCTGGATTTTGGCCTTCACATTTTCAATGGTGTCGGAAGGCTCCACCTCCAAAGTAATG 11586 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || |||||| Sbjct 11587 GTCTTGCCAGTAAGAGTCTTCACGAAGATCTGCATT 11622 Score = 87.8 bits (96), Expect = 3e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| |||| || | ||| || ||| || |||||||| | || | | Sbjct 10725 CGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGAGTACGTCCA 10784 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| || ||||||||||| | | ||| ||||| ||||| ||||| || || Sbjct 10785 TCCTCCAGTTGCTTGCCGGCAAAAATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTG 10844 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | || ||| || ||||||| ||| || || | ||| || Sbjct 10845 TCTTGGATCTTAGCCTTAACGTTCTCAATGGTGTCGGAAGGCTCCACCTCCAAAGTAATG 10904 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || |||||| Sbjct 10905 GTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCATT 10940 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || || | ||| || || |||| || | || | ||| || ||| ||||||||| Sbjct 8658 ATTCCTCCGCGCAAACGGAGCACCAAGTGGAGAGTGGACTCCTTCTGAATGTTATAGTCG 8717 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || ||||| || || || | ||| || || || Sbjct 8718 GACAGGGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAAACGCTGCTGGTCTGGG 8777 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || ||||| || |||| || | ||| || || ||||||| |||| Sbjct 8778 GGGATTCCCTCCTTGTCTTGGATCTTGGCCTTCACATTCTCGATGGTGTCGGAAGGCTCA 8837 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || || || || || || |||||| Sbjct 8838 ACCTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTCACGAAGATCTGCATT 8888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899639150857920