Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq817 150 1e-31
seq98 87.8 1e-12
seq1117 86.0 5e-12
seq118 86.0 5e-12
>seq817
Length=4525942
Score = 150 bits (166), Expect = 1e-31
Identities = 166/217 (76%), Gaps = 8/217 (4%)
Strand=Plus/Minus
Query 34447 GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAA-- 34504
||||| || |||| |||||| || || ||||| || || || ||||||| ||||| |
Sbjct 4403215 GTTTGGGCTCCCAACTCGCATCCAAAATACTTGGTTGGATACGTGGCCGGTCGTCCGATG 4403156
Query 34505 GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTT 34564
|||| | || | |||| ||||||||| | || ||||| ||||| || ||||| || |
Sbjct 4403155 GCGCGT--GCCACCTCGGCCATGTTGACCAGAACGGTCTTAATGCCATTTCCCTTGCCCT 4403098
Query 34565 CGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCG 34622
|||||||||| |||| ||||||||| |||||||||||||| ||||| ||| ||||
Sbjct 4403097 CGACCTTGGCCTGCAG--GCGCGGCATCTTGTAGCGGTAGAAGATGTCCGTCACGCTGCG 4403040
Query 34623 GTTAACGTTCACAGTCCCCATCGTGGCTGGTGTTACT 34659
||||||||||| ||| |||| || ||| ||| ||
Sbjct 4403039 ATTAACGTTCACGGTCGCCATTTTGATTGGAGTTGCT 4403003
>seq98
Length=20832
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 110271 AAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTG 110330
||||||| || ||||| ||||| || || || || ||||| ||| | || |||||||
Sbjct 12987 AAATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCTT 12928
Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390
||| || | | | || || || || ||||| || || | ||| || |
Sbjct 12927 CCGACACCATTGAAAATGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCCCCAGACC 12868
Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450
| || | || |||| || || || ||||||||||||| | || || ||||||| |
Sbjct 12867 AGCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGACGCACCCTGTCGGATTATA 12808
Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
|||| || || |||||||| ||||| ||||| | | ||||| || ||||
Sbjct 12807 ACATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTGCGCGGAGGAA 12757
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
|||||| || || || || ||| | || ||||| ||||| ||| | || |||||||
Sbjct 9344 AATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 9285
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||| || ||| | || || ||||| ||||| || || | ||| || ||
Sbjct 9284 CGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 9225
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| | | || | || || || ||||||||||||| | || || ||||||| ||
Sbjct 9224 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCGGATTATAA 9165
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
||| || || |||||||| ||||| ||||| | | ||||| || ||||
Sbjct 9164 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTGCGCGGAGGAA 9115
Score = 82.4 bits (90), Expect = 6e-11
Identities = 157/230 (68%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
|||||| || || || || ||| | || ||||| ||||||||| | || |||||||
Sbjct 10256 AATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACCATTACCTTGGAGGTGGAGCCTTC 10197
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||| || ||| | || || ||||| ||||| || || | ||| | | ||
Sbjct 10196 CGACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCAG-ACCA 10138
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| | | || | || || || ||||||||||||| | || || ||||||| ||
Sbjct 10137 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCGGATTATAA 10078
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
||| || || |||||||| ||||| ||||| | | ||||| || ||||
Sbjct 10077 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTGCGCGGAGGAA 10028
>seq1117
Length=387944
Score = 86.0 bits (94), Expect = 5e-12
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
|||||| || || || || ||| | || ||||| |||||||| | || |||||||
Sbjct 176881 AATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACCATTACTTTGGAGGTGGAGCCTTC 176822
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||| || | | | || || ||||| ||||| || || | ||| || ||
Sbjct 176821 CGACACCATTGAGAACGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 176762
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| | || |||| ||| || || ||||||||||||| | || || ||||||| ||
Sbjct 176761 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCGGATTATAA 176702
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
||| || || |||||||| ||||| ||||| | | || || || ||||
Sbjct 176701 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTCCGTGGAGGAA 176652
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
|||||| || || || || ||| | || ||||| |||||||| | || |||||||
Sbjct 174601 AATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACCATTACTTTGGAGGTGGAGCCTTC 174542
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||| || | | | || || || || ||||| || || | ||| || ||
Sbjct 174541 CGACACCATTGAGAACGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCCCCAGACCA 174482
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| | || |||| ||| || || ||||||||||||| | || || ||||||| ||
Sbjct 174481 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCGGATTATAA 174422
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
||| || || |||||||| ||||| ||||| | | || || || ||||
Sbjct 174421 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTCCGTGGAGGAA 174372
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
|||||| || || || || ||| | || ||||| ||||| ||| | || |||||||
Sbjct 174829 AATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 174770
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||| || ||| | || || ||||| ||||| || || | || |||||
Sbjct 174769 CGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGATCA 174710
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| | | || | || || || ||||||||||||| | | || || ||||||| ||
Sbjct 174709 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGATTATAA 174650
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
||| || || |||||||| ||||| ||||| | | || || || ||||
Sbjct 174649 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTCCGTGGAGGAA 174600
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
|||||| || || || || ||| | || ||||| ||||| ||| | || |||||||
Sbjct 175513 AATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 175454
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||| || ||| | || || ||||| ||||| || || | | |||||
Sbjct 175453 CGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCTTCCAGATCA 175394
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| | | || | || || || ||||||||||||| | | || || ||||||| ||
Sbjct 175393 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGATTATAA 175334
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
||| || || |||||||| ||||| ||||| | | ||||| || ||||
Sbjct 175333 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTGCGCGGAGGAA 175284
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
|||||| || || || || ||| | || ||||| ||||| ||| | || |||||||
Sbjct 177793 AATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 177734
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||| || ||| | || || ||||| ||||| || || | ||| || ||
Sbjct 177733 CGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 177674
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| | | || | || || || ||||||||||||| | | || || ||||||| ||
Sbjct 177673 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGATTATAA 177614
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
||| || || |||||||| ||||| ||||| | | || || || ||||
Sbjct 177613 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTCCGTGGAGGAA 177564
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
|||||| || || || || ||| | || ||||| ||||| ||| | || |||||||
Sbjct 178705 AATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 178646
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||| || ||| | || || ||||| ||||| || || | ||| || ||
Sbjct 178645 CGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 178586
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| | | || | || || || ||||||||||||| | | || || ||||||| ||
Sbjct 178585 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGATTATAA 178526
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
||| || || |||||||| ||||| ||||| | | || || || ||||
Sbjct 178525 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTCCGTGGAGGAA 178476
Score = 82.4 bits (90), Expect = 6e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331
|||||| || || || || ||| | || ||||| ||||| ||| | || |||||||
Sbjct 179845 AATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 179786
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||| || ||| | || || ||||| ||||| || || | ||| || ||
Sbjct 179785 CGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 179726
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| | | || | || || || ||||||||||||| | | || || ||||||| ||
Sbjct 179725 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGATTATAA 179666
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501
||| || || |||||||| ||||| ||||| | | || || || ||||
Sbjct 179665 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTCCGTGGAGGAA 179616
>seq118
Length=2377031
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || || || ||||| | |||||||| ||||| ||| | || |||||||
Sbjct 359272 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 359213
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | || || ||||| ||||| || ||| | ||| |||||
Sbjct 359212 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 359153
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | || || | || || || ||||||||||||| | | || || | || ||||||
Sbjct 359152 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAAC 359093
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499
|| || || || || || |||||| ||||| | | ||||| || ||
Sbjct 359092 ATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGCCTGCGTGGTGG 359046
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412834777276508
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