Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq817 150 1e-31 seq98 87.8 1e-12 seq1117 86.0 5e-12 seq118 86.0 5e-12 >seq817 Length=4525942 Score = 150 bits (166), Expect = 1e-31 Identities = 166/217 (76%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 34447 GTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCCGGACGTCCAA-- 34504 ||||| || |||| |||||| || || ||||| || || || ||||||| ||||| | Sbjct 4403215 GTTTGGGCTCCCAACTCGCATCCAAAATACTTGGTTGGATACGTGGCCGGTCGTCCGATG 4403156 Query 34505 GCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTGCCCTTTCCTT 34564 |||| | || | |||| ||||||||| | || ||||| ||||| || ||||| || | Sbjct 4403155 GCGCGT--GCCACCTCGGCCATGTTGACCAGAACGGTCTTAATGCCATTTCCCTTGCCCT 4403098 Query 34565 CGACCTTGGC--GCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCCACATTGCG 34622 |||||||||| |||| ||||||||| |||||||||||||| ||||| ||| |||| Sbjct 4403097 CGACCTTGGCCTGCAG--GCGCGGCATCTTGTAGCGGTAGAAGATGTCCGTCACGCTGCG 4403040 Query 34623 GTTAACGTTCACAGTCCCCATCGTGGCTGGTGTTACT 34659 ||||||||||| ||| |||| || ||| ||| || Sbjct 4403039 ATTAACGTTCACGGTCGCCATTTTGATTGGAGTTGCT 4403003 >seq98 Length=20832 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 110271 AAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTG 110330 ||||||| || ||||| ||||| || || || || ||||| ||| | || ||||||| Sbjct 12987 AAATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACCATCACCCTGGAGGTGGAGCCTT 12928 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||| || | | | || || || || ||||| || || | ||| || | Sbjct 12927 CCGACACCATTGAAAATGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCCCCAGACC 12868 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || | || |||| || || || ||||||||||||| | || || ||||||| | Sbjct 12867 AGCAGCGTCTCATTTTCGCCGGCAAGCAGCTGGAGGATGGACGCACCCTGTCGGATTATA 12808 Query 110451 ACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 |||| || || |||||||| ||||| ||||| | | ||||| || |||| Sbjct 12807 ACATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTGCGCGGAGGAA 12757 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || ||| | || ||||| ||||| ||| | || ||||||| Sbjct 9344 AATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 9285 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | || || ||||| ||||| || || | ||| || || Sbjct 9284 CGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 9225 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | || || || ||||||||||||| | || || ||||||| || Sbjct 9224 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCGGATTATAA 9165 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || |||||||| ||||| ||||| | | ||||| || |||| Sbjct 9164 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTGCGCGGAGGAA 9115 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || ||| | || ||||| ||||||||| | || ||||||| Sbjct 10256 AATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACCATTACCTTGGAGGTGGAGCCTTC 10197 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | || || ||||| ||||| || || | ||| | | || Sbjct 10196 CGACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCAG-ACCA 10138 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | || || || ||||||||||||| | || || ||||||| || Sbjct 10137 GCAGCGTTTGATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCGGATTATAA 10078 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || |||||||| ||||| ||||| | | ||||| || |||| Sbjct 10077 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTGCGCGGAGGAA 10028 >seq1117 Length=387944 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || ||| | || ||||| |||||||| | || ||||||| Sbjct 176881 AATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACCATTACTTTGGAGGTGGAGCCTTC 176822 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || | | | || || ||||| ||||| || || | ||| || || Sbjct 176821 CGACACCATTGAGAACGTGAAGGCTAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 176762 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || |||| ||| || || ||||||||||||| | || || ||||||| || Sbjct 176761 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCGGATTATAA 176702 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || |||||||| ||||| ||||| | | || || || |||| Sbjct 176701 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTCCGTGGAGGAA 176652 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || ||| | || ||||| |||||||| | || ||||||| Sbjct 174601 AATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACCATTACTTTGGAGGTGGAGCCTTC 174542 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || | | | || || || || ||||| || || | ||| || || Sbjct 174541 CGACACCATTGAGAACGTGAAGGCCAAAATCCAGGACAAGGAGGGAATCCCCCCAGACCA 174482 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | || |||| ||| || || ||||||||||||| | || || ||||||| || Sbjct 174481 GCAGCGTCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGGCGCACCCTGTCGGATTATAA 174422 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || |||||||| ||||| ||||| | | || || || |||| Sbjct 174421 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTCCGTGGAGGAA 174372 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || ||| | || ||||| ||||| ||| | || ||||||| Sbjct 174829 AATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 174770 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | || || ||||| ||||| || || | || ||||| Sbjct 174769 CGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCAGATCA 174710 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | || || || ||||||||||||| | | || || ||||||| || Sbjct 174709 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGATTATAA 174650 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || |||||||| ||||| ||||| | | || || || |||| Sbjct 174649 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTCCGTGGAGGAA 174600 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || ||| | || ||||| ||||| ||| | || ||||||| Sbjct 175513 AATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 175454 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | || || ||||| ||||| || || | | ||||| Sbjct 175453 CGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCTTCCAGATCA 175394 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | || || || ||||||||||||| | | || || ||||||| || Sbjct 175393 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGATTATAA 175334 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || |||||||| ||||| ||||| | | ||||| || |||| Sbjct 175333 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTGCGCGGAGGAA 175284 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || ||| | || ||||| ||||| ||| | || ||||||| Sbjct 177793 AATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 177734 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | || || ||||| ||||| || || | ||| || || Sbjct 177733 CGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 177674 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | || || || ||||||||||||| | | || || ||||||| || Sbjct 177673 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGATTATAA 177614 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || |||||||| ||||| ||||| | | || || || |||| Sbjct 177613 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTCCGTGGAGGAA 177564 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || ||| | || ||||| ||||| ||| | || ||||||| Sbjct 178705 AATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 178646 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | || || ||||| ||||| || || | ||| || || Sbjct 178645 CGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 178586 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | || || || ||||||||||||| | | || || ||||||| || Sbjct 178585 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGATTATAA 178526 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || |||||||| ||||| ||||| | | || || || |||| Sbjct 178525 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTCCGTGGAGGAA 178476 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGA 110331 |||||| || || || || ||| | || ||||| ||||| ||| | || ||||||| Sbjct 179845 AATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACCCTGGAGGTGGAGCCTTC 179786 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || ||| | || || ||||| ||||| || || | ||| || || Sbjct 179785 CGACACCATCGAGAATGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 179726 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || | | || | || || || ||||||||||||| | | || || ||||||| || Sbjct 179725 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGATTATAA 179666 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 ||| || || |||||||| ||||| ||||| | | || || || |||| Sbjct 179665 CATCCAGAAGGAATCTACCCTGCACTTGGTGCTCCGTCTCCGTGGAGGAA 179616 >seq118 Length=2377031 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || ||||| | |||||||| ||||| ||| | || ||||||| Sbjct 359272 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 359213 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | || || ||||| ||||| || ||| | ||| ||||| Sbjct 359212 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 359153 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||||||||||| | | || || | || |||||| Sbjct 359152 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAAC 359093 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || || || || |||||| ||||| | | ||||| || || Sbjct 359092 ATCCAGAAGGAGTCGACCTTGCACTTGGTGCTCCGCCTGCGTGGTGG 359046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412834777276508