Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq118 82.4 6e-11
seq98 82.4 6e-11
>seq118
Length=2377031
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || || || ||||| | || ||||| ||||| ||| | || |||| ||
Sbjct 359272 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 359213
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | || || ||||| || || || ||| | ||| ||||||
Sbjct 359212 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCAGATCAG 359153
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | || || | || || || ||||||||||| | | || || | |||||||||
Sbjct 359152 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAAC 359093
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| || |||||||| || |||||| |||||
Sbjct 359092 ATCCAGAAGGAGTCGACCTTGCACTTGGTG 359063
>seq98
Length=20832
Score = 82.4 bits (90), Expect = 6e-11
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
|||||| || || || || ||| | || ||||| ||||||||| | || |||| ||
Sbjct 10484 AATGCAGATCTTCGTGAAGACTCTTACTGGCAAGACCATTACCTTGGAGGTGGAGCCTTC 10425
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||| || ||| | || || ||||| || || || || | ||| || ||
Sbjct 10424 CGACACCATCGAGAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCA 10365
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| | || |||| ||| || |||||||||||||| | || || | ||||||||
Sbjct 10364 GCAGCGTCTCATTTTTGCCGGCAAACAGCTGGAGGATGGACGCACTCTGTCCGACTACAA 10305
Query 107735 CATTCAAAAGGAGTCTAC 107752
|||||| |||||||| ||
Sbjct 10304 CATTCAGAAGGAGTCGAC 10287
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398870208062284
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |