Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1255 138 8e-27 seq1254 95.1 9e-14 >seq1255 Length=5079760 Score = 138 bits (152), Expect = 8e-27 Identities = 553/866 (64%), Gaps = 6/866 (1%) Strand=Plus/Minus Query 282018 AATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTG 282077 ||||| |||| ||||||| ||| |||| ||||| | | || || || || || || | Sbjct 1949580 AATCAGTTCCCTCGAACAGAGAGTCAATCTCAATGCTGGCCTGGGTGGAGGAGGAGAGGG 1949521 Query 282078 CACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGAT--T 282135 || || ||||| || || || || | || | || | ||| ||| ||| | | Sbjct 1949520 TTCGCTTTGCACGCTCGCAGGCAGTGCGCAGACGACGCAGGGCGC--GCTTGTTGGTGGT 1949463 Query 282136 CAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATC 282195 || ||| | || | || | |||||| || | || | || || ||||| || || Sbjct 1949462 CAGATCCTTCTTGTGCTTGCGCTTGAACTCCTGCACGAAGTGCGTGACCAGACGGTTGTC 1949403 Query 282196 AAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATC 282255 ||||| ||||| ||||| | |||| || | || | | || | || | || || Sbjct 1949402 GAAATCCTCACCACCCAAATGGGTATCACCGGCGGTGGACTTGACCTCAAAGATACCGTC 1949343 Query 282256 TTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 || | |||| || | ||||| ||| || ||||||| ||| || || || || || Sbjct 1949342 ATCGATCGACAGAATGGACACATCGAAGGTGCCGCCACCCAGATCGAAGATGAGCACGTT 1949283 Query 282316 CATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATT 282375 || | || || || |||||||| |||| ||| ||||| || || || || Sbjct 1949282 GCGCTCGCCAACGGCCTTCTTGTCCAGACCATAGGCAATAGCCGCAGCCGTGGGCTCGTT 1949223 Query 282376 AATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTG 282435 ||| || | | ||||| ||||| || || |||| ||||| || ||||| || | || Sbjct 1949222 AATGATACGAAGCACATTCAGACCGGCGATGGTTCCGGCATCCTTGGTGGCCTGACGCTG 1949163 Query 282436 TGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATA 282495 || ||||| || || || || || || || || || | || || || || | ||| Sbjct 1949162 GGAGTCGTTGAAGTAGGCCGGCACGGTGATGACCGCGTTGGTCACAGTCTTGCCCAGATA 1949103 Query 282496 AGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATA 282555 || || || | ||||| || | | | ||| || || || | || || ||| | Sbjct 1949102 GGCCTCGGCAGTCTCCTTCATCTTGGTGAGCACCATCGAGGAGATCTCCTCGGG-GAAGA 1949044 Query 282556 TTG-CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAA 282614 | ||| || | | || | || |||| | || ||| | |||| | | | Sbjct 1949043 AGGTCTTCTTCTCGTCCTTGTAAGTCACCTCAATCTTGGGCTTACCATCAACGCTGACCA 1948984 Query 282615 CTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAA 282674 | | || ||||| | ||||| || || || || ||||| || | | |||| Sbjct 1948983 CCTCGAAGGGCCAGTGCTTCATGTCCGACTGCACGGCGGAGTCATCGAACTTGCGGCCAA 1948924 Query 282675 TTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTG 282734 | | || || ||||| || || || | ||| || || | || | || | ||||| | Sbjct 1948923 TGAGACGCTTGGCATCGAAGATCGTCTGGGTCGGGTTCATCGCCACCTGGTTCTTGGCGG 1948864 Query 282735 CATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTAC 282794 |||| || |||||| | || || || || || | |||||| ||||| || || ||||||| Sbjct 1948863 CATCGCCGATCAGACGCTCCGTATCGGTGAAGGCAACATAGGATGGTGTGGTACGATTAC 1948804 Query 282795 CTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAG 282854 | || || || || || || || || || |||| || | || || || || | | Sbjct 1948803 CCTGGTCGTTAGCGATGATCTCGACCTTGCCATGCTGGAACACTCCCACGCACGAGTAGG 1948744 Query 282855 TTGTTCCTAAATCAATACCAATAGCA 282880 | || || ||||||||||||| |||| Sbjct 1948743 TGGTGCCCAAATCAATACCAACAGCA 1948718 >seq1254 Length=5769022 Score = 95.1 bits (104), Expect = 9e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 || |||||||||| || || || ||||| || ||| | |||| ||||| || Sbjct 2593995 GTGCCACCACCCAAGTCGAATATGAGTACGTTGCGCTCTCCCTTGAGGTTCTTATCGAGT 2593936 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || || || |||||||| || ||||| || || || || | ||||||||||| ||| Sbjct 2593935 CCGTAGGCCAAGGCAGCAGCCGTGGGTTCGTTGATGATCCTTAGCACATTAAGACCCGCA 2593876 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || || ||||| || || || || | ||| ||||||||| || || || || || Sbjct 2593875 ATGGAGCCCGCATCCTTGGTAGCCTGCCGTTGGCTATCGTTAAAGTAAGCCGGCACCGTG 2593816 Query 282464 ATAACGGCATCTGTTAC 282480 || ||||| || |||| Sbjct 2593815 ATCACGGCGTCCTTTAC 2593799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740563826130456