Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq991 102 8e-17 seq264 91.5 1e-13 >seq991 Length=691118 Score = 102 bits (112), Expect = 8e-17 Identities = 122/165 (74%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| || || || |||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 450655 TCTTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 450596 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || ||| || ||| | | ||| | ||||| | ||||| || |||| ||| | Sbjct 450595 TCCTGAATCTTGGCTTTGACATTTTCGATAGTGTCCGACGGTTCGACCTCAAGAGTGATG 450536 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTT 137421 |||||||| || | || || ||||| || ||||| ||| |||| Sbjct 450535 GTCTTGCCCGTGAGGGTCTTCACGAAGATCTGCAT--CTTGTGTT 450493 >seq264 Length=2409178 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||||| ||| ||||| | || || || || || |||||||||||| Sbjct 1047313 GCCGCCGCGCAGACGCAGAACCAAATGCAGAGTGGACTCCTTCTGGATGTTGTAATCGGA 1047254 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || | ||| || || || || || || |||||||||| ||||| || || || Sbjct 1047253 CAGGGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 1047194 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || ||||| || || || | | || | ||||| | ||| || || Sbjct 1047193 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCCGAGGGCTCGAC 1047134 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | |||||||||||||| || || || || || ||||| Sbjct 1047133 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 1047086 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | || || || | || || || || || |||||||||||| Sbjct 1045261 GCCACCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 1045202 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 || || | ||| || || || || || || |||||||||| ||||| || || || Sbjct 1045201 CAGGGTACGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 1045142 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || ||||| || || || | | || | || || | ||| || || Sbjct 1045141 AATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCAGAGGGCTCGAC 1045082 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | |||||||||||||| || |||||||| |||||||| Sbjct 1045081 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTCTTTACGAAGATTTGCAT 1045034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488535719179200