Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq59 86.0 1e-11 >seq59 Length=1347070 Score = 86.0 bits (94), Expect = 1e-11 Identities = 168/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 183037 CAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAA 183096 ||| | ||| || | | || || || ||||| | || | || ||||||||||| ||| Sbjct 1330306 CAATTGCAGCTGGTTCGCGAGGGCAAGATGCACGGCTTCCTGCGCATGTACTGGGCCAAA 1330365 Query 183097 AAGATACTTGAATGGACAAGAACTCCGGAAGATGC-TTTGAGTTATAGTATCTATATGAA 183155 ||||| || ||||||| || ||||| | || ||||| || || | |||| Sbjct 1330366 AAGATCCTCGAATGGAGCCCCACGCCGGAGCAGGCGCTTGAG-TACGCCATTTTACTGAA 1330424 Query 183156 CAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTAT 183215 | | |||||| || ||||| ||||| ||||| || || ||||| |||||||| || Sbjct 1330425 CGACAAGTACAGTCTGGACGGGCGCGATCCAAACGGCTATGTGGGTTGCATGTGGTCCAT 1330484 Query 183216 TTGCGGATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATAT 183275 |||| | ||||||| | ||||| || | | || ||||| ||||| | || || Sbjct 1330485 CGGCGGCGTCCACGATATGGGCTGGAAGGAGCGGGCCATCTTTGGCAAGATTCGGTACAT 1330544 Query 183276 GAATTA 183281 ||| || Sbjct 1330545 GAACTA 1330550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903395887180160