Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq185 203 5e-46 seq1002 161 1e-33 >seq185 Length=662383 Score = 203 bits (224), Expect = 5e-46 Identities = 338/482 (70%), Gaps = 6/482 (1%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||||||||||||||||||||||| || ||||| || || | || | ||| Sbjct 114816 AGGCCGAGGCCTCCTTTTGGACCGTGGAAGAGGTGGATCTGTCCAAGGATTTAACCGACT 114757 Query 1455856 GGGTGTCGC-TGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGC 1455914 || |||| | | || ||||| || ||||||||| || || || || || ||| || Sbjct 114756 GGCA-TCGCCTTAAGGATGACGAACGTCATTTCATCTCCCATGTGCTGGCGTTCTTT-GC 114699 Query 1455915 CGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATT 1455974 |||| |||||||||||| ||||||||||| || || || | | ||||| || | Sbjct 114698 CGCCTCCGATGGCATCGTCAACGAGAACCTGGTCGAGCGTTTCAGTCAGGAGGTGCAGAT 114639 Query 1455975 GCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAAC 1456034 ||||||| || | || || || |||||||||||||| || ||| |||| || || | Sbjct 114638 CACAGAGGCCCGCTGCTTCTATGGCTTCCAGATCGCCATGGAGAACGTCCATTCGGAGAT 114579 Query 1456035 CTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCG 1456094 ||| | ||||||||||| ||| || ||| ||| || |||| |||| ||| Sbjct 114578 GTACAGTGTGCTGATCGACACTTACATCCGGGATCCGCATCAGCGGGACTACCTGTTTAA 114519 Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 |||||||| || ||||| |||||| | || || |||||||| || |||||| Sbjct 114518 TGCCATCGAGACCATGCCGGCGGTGAAGCGCAAAGCTGACTGGGCCCTGTCCTGGATCTC 114459 Query 1456155 CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCATC 1456213 | | | || |||||| |||||| || | | ||||||| ||||||||||||| Sbjct 114458 CTCCAA--GTCTGCCAACTTTGGAGAGCGGATCATTGCATTTGCCGCCGTCGAGGGCATC 114401 Query 1456214 TTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 || ||| ||||| || | | || || ||||| |||||||||||||| ||||| || Sbjct 114400 TTCTTCAGCGGCAGCTTTGCCTCTATTTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGC 114341 Query 1456274 CT 1456275 || Sbjct 114340 CT 114339 Score = 102 bits (112), Expect = 1e-15 Identities = 161/223 (72%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 1456521 AGATCAT-CGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTG 1456579 ||||||| ||| || || || || || || | ||||| | | ||| | ||||| ||| Sbjct 114231 AGATCATTCGT-GACGCTGTGGACATTGAACAGGAGTTCTTGACCGATGCCCTGCCCGTG 114173 Query 1456580 GCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGAC 1456638 || |||||||||||| || ||| | |||| ||||||||||| ||| || || || Sbjct 114172 AATCTGATCGGCATGAACTGCGACC--TAATGTCGCAGTACATTGAGTTT-GTGGCTGAT 114116 Query 1456639 CGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATG 1456698 |||||||||| | | | ||| ||| || |||| || ||||||||| | Sbjct 114115 CGCCTGCTCGTCGAGTTGGGCGTTGGAAAAAT-CTACAACACCAAGAACCCGTTCAACTT 114057 Query 1456699 GATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||||| |||||||||| || ||||||||||||||||| ||| Sbjct 114056 CATGGAGATGATCTCGCTGGACGGCAAGACCAACTTTTTTGAG 114014 >seq1002 Length=860715 Score = 161 bits (178), Expect = 1e-33 Identities = 247/347 (71%), Gaps = 4/347 (1%) Strand=Plus/Minus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931 |||||||| |||||||| ||| ||| | || |||||||| | || || | ||||||| Sbjct 114592 AAGCGCAGCATGGCACAGCGGGACTGTATGGGCTCGATGATC-TTCTCGCTGGTGTTGCA 114534 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGT-CGACCGGAGGGCCTGTT 332990 ||| ||||| || || || || || | | |||||||||| |||| | |||||||| | Sbjct 114533 GGCGAGGGCGAAACGAGTGGTGCTGCTGTAGATTTCCATGGTGCGAC-GCAGGGCCTGCT 114475 Query 332991 GGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCG 333050 |||| | ||| | || |||||||||||| || || | ||||||||||| ||| | | Sbjct 114474 GGGCACCTTCCGTCATGCTGTCGGCCTCGTCCAGAATCACAATCTTGTGGCGGCCGCGAG 114415 Query 333051 GCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGC 333110 ||| ||| | | | |||| ||||| | |||||||| || || | ||||| Sbjct 114414 GCAATGTTACCTTCTGCTGGGCGAACATCTTGATCTTGTTGCGCACCACATCGATGCCGC 114355 Query 333111 GCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGC 333170 |||| | || || || || |||||||| ||||| | | | | |||| | | | Sbjct 114354 GCTCATTTGAGGCATTCAGCTCGAGCACCGCCTCCTTGTAGCTGTCTCCCAGCAAAATTC 114295 Query 333171 GCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 ||||||||||| |||| | |||||||||||| ||| || |||||| Sbjct 114294 GCGCCAGGCACTGGATGGTGGTGGTCTTGCCCACGCCAGGGGGACCC 114248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177680411307672