Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq71 123 4e-23 >seq71 Length=15183 Score = 123 bits (136), Expect = 4e-23 Identities = 497/775 (64%), Gaps = 42/775 (5%) Strand=Plus/Minus Query 160964 GCTTTAATCTCTGGTATAACTGGGCAGGATGGATCCTATCTTGCTGAACTTCTACTGAAG 161023 ||||| || | ||| | |||||||||||||| || |||||||||||| |||| ||| | Sbjct 4444 GCTTTGATTACGGGTGTTACTGGGCAGGATGGCTCTTATCTTGCTGAATTTCTTCTGGGG 4385 Query 161024 AAGGGGTATGAAGTCCATGGTATTATTCGTAGAACCTCCTCGTTTAATACAGGAAGA--- 161080 || || || ||||| |||||||| | || | | || | || ||||||| || Sbjct 4384 AAAGGTTACGAAGTACATGGTATCAAGCGCCGTGCTTCTTTATTCAATACAGCCCGAGTG 4325 Query 161081 ----------ATC--GATC---ATATCTTCGATCAGT----TACACCTCCACTACGGGGA 161121 ||| |||| |||| | || || || | || || || ||||| Sbjct 4324 GACGGCATTTATCAGGATCCGCATAT-TGGGAATAGCCGCCTAAAGCTGCATTATGGGGA 4266 Query 161122 TTTGACTGACTCC-CTGAACATAGTCTCTATCATTAAG---GAAGTAGAACCTGATGAGA 161177 |||||| ||| || || | | || | |||| | || || | || |||||| Sbjct 4265 TTTGACGGACACCTCTAATC----TCACGCGCATTTTGTCAGACGTGCAGCCAGATGAGG 4210 Query 161178 TCTACAACCTAGGGGCACAGAGTCATGTGAAAGTATCTTTCGAGGAACCTGAATATACAG 161237 | || ||||| || |||||| ||||||| || ||| || || |||||| | Sbjct 4209 TTTATAACCTCGGCGCACAGTCTCATGTGGCGGTGAGTTTTGAAATGCCAGAATATTCTA 4150 Query 161238 CACAGACTGATGCTCTGGGAACCCTAAGAGTATTGGAGGCAGTTCGTCTCCTAGGTATGA 161297 || | ||||| ||||| | || | | | || || |||| | ||||| || Sbjct 4149 CAGATGTGGATGCAATGGGA-CGCTTCGGTTGCTAGAAGCCATTCGCTTTCTAGGATTGG 4091 Query 161298 CAGATAGGGTCCGTATCTACCAGGCATCCACCAGTGAGTTGTATGGGTTGGTACAAGAGA 161357 | | ||| | || |||||||| || ||| | || |||||||| || || | Sbjct 4090 GTAAAACAACGCGTTTTTATCAGGCATCTACATCTGAACTATACGGGTTGGTGCAGGAAA 4031 Query 161358 CACCACAGAAAGAAACAACACCTTTCTACCCACGATCTCCATATGGCGTAGCTAAACTCT 161417 |||| || || ||||||||||||||| | || || || || | || |||||| | | Sbjct 4030 CACCGCAAAAGGAAACAACACCTTTCCATCCGCGCAGCCCCTACGCTGTGGCTAAAATGT 3971 Query 161418 ATGGATATTGGATT---GTAAAGAACTACAGAGAGAGTTATGGGATGCACGCCAGTAGTG 161474 | | || |||||| ||| || ||| | ||| ||| | ||| | ||| ||| | Sbjct 3970 ACGCTTACTGGATTACCGTA---AATTACCGTGAGGCTTACGATATGTATGCCTGTAACG 3914 Query 161475 GTATTCTATTCAACCATGAGTCACCACGACGGGGTGAGACTTTCGTAACCCGTAAGATTA 161534 | ||| | || |||||||| || || || ||||| || || ||||| || || |||| Sbjct 3913 GGATTTTGTTTAACCATGAAAGCCCGCGTCGTGGTGAAACATTTGTAACACGCAAAATTA 3854 Query 161535 CTAGGGGACTATCCCGTATTAGTACAGGACTACAGGATTGTCTATACCTAGGTAATCTAA 161594 | | || || || |||| | || || | | || || ||| | || ||| | | Sbjct 3853 CGCGTGGGCTGGCCAATATTGCTGTTGGTCTGGAAAAATGCCTGTACATGGGGAATATCA 3794 Query 161595 ACTCAAGACGAGATTGGGGTCATGCTGAAGACTA--TGTGGAGGCTATGTGGTTGATGTT 161652 || || || ||||| ||||| |||| || || | | || | ||| ||||| | Sbjct 3793 ACAGTCTGCGTGACTGGGGGCATGCAAAAGATTACGTGCGCATGCAA--TGGATGATGCT 3736 Query 161653 ACAACAGGAAACTCCTGATGACTATGTGATTGCCACAGGTAAAGAGTATTCAGTG 161707 ||||| || || ||||| | ||| ||||| ||||| | ||||||| ||| Sbjct 3735 CCAACAAGAGCAGCCAGATGATTTTGTAATTGCAACAGGGGTACAGTATTCTGTG 3681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729917227693280