Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq991 389 5e-103 seq185 150 2e-31 >seq991 Length=691118 Score = 389 bits (430), Expect = 5e-103 Identities = 1226/1871 (66%), Gaps = 48/1871 (3%) Strand=Plus/Plus Query 68374 GTAAACTGAATGG-GTGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAG 68432 || ||||| |||| || | | || || || || || ||||||||||| |||||||| || Sbjct 357723 GTGAACTGTATGGCGTTCGCA-GCCGGCTTCGTGCGGAGATAGTACATTCCGGTTTTAAG 357781 Query 68433 ACCTAGACT-CCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTA 68491 || || || ||| ||| ||||| || || || ||| ||| | || ||||| | Sbjct 357782 GCC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCATAGTTGGGCTCGGCAA 357840 Query 68492 TATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTA 68551 |||||| || | ||||||||| ||||||||||| || || | ||| || |||||||| | Sbjct 357841 CATGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGATCCGCAGCCATTTTAA 357900 Query 68552 TAATACTCTTTTGA-GGA-ATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCAT-CTG 68608 | | ||| || ||| || ||||| | ||||| | | | | | ||| ||| Sbjct 357901 TGGTGGACTT--GACGGAGATCTCCCACACCGTCTTGTACA---GATCGCGCACATGCTG 357955 Query 68609 G---AAGGC-TCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTC 68663 | | ||| ||| |||| ||||| || |||| ||| || || ||||| || || Sbjct 357956 GGGGATGGCCTCGATATTCTGAATTGAGCCACGGCTGGAAATTATCTGGTTCTTCATATC 358015 Query 68664 ATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAA 68723 ||||| |||||| | |||||| | | | || | || || | ||||| | || || Sbjct 358016 ATCATCCCACAAGTCAAGCTCCGTCAGATCCCTCAACAGGTGGTGGTTAACCACCTGGAA 358075 Query 68724 TTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATT 68783 ||| || || | || | || || || ||||| |||| || || || | ||||| || Sbjct 358076 TTCGCCGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGCTCGAAGGATTCGTT 358135 Query 68784 ATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCT 68843 ||| |||| || || ||||| ||||| |||||||| || || |||| | | || || Sbjct 358136 ATTGCCCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCT 358195 Query 68844 AAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTAC 68903 | ||||||| | |||| || || || | ||| ||||| || | | ||| || Sbjct 358196 GACACCATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAGAGGTTCGTTGGGAC 358255 Query 68904 AACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTC 68963 | ||| | |||||| || |||||||| || ||| | || | |||||||| Sbjct 358256 CTTGTCCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTGCCCTCGTATGTTTC 358315 Query 68964 ATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGT 69023 ||| || ||||| | || |||||||||||||| || | ||| || ||||| || || Sbjct 358316 ATACGGACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGT 358375 Query 69024 TTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAA 69080 ||| || |||| || || |||| || || || | || ||| | || ||| | | Sbjct 358376 TTCAAAGATCTGCTGGTTTAGGAGACCTGC--CTCCTCG-CTTTCGTAAGGG-AATCTCA 358431 Query 69081 A-AGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTAT 69139 ||||| || ||||| || || ||||||| ||||| || || || | ||| ||| || Sbjct 358432 TCAGAATCAAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAAT 358491 Query 69140 TTGAACTTTCAG--CTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATT 69197 |||| |||| | | ||||| | ||||||||||| || || ||||| ||||| ||||| Sbjct 358492 TTGA--TTTCCGGGCCTCTGGCAGGGGATAATAATTGATGTCAATAATCTTATTCAGATT 358549 Query 69198 TCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATC--AAATCGTC-CATCTAT 69254 | ||| ||| || ||||| ||||| ||| || | || || || | Sbjct 358550 CTTAGCCACTGTCTTAGTGACCTCCTTCAGTTTCTTAAAGTCGTACGTCTTCTCAGGGGT 358609 Query 69255 AACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGC 69314 || ||||| || || || | ||||| || || ||||| || | || | | | Sbjct 358610 CACGAACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGA 358669 Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 ||| | | || ||||| || |||||||| || ||||| || || | ||| |||||||| Sbjct 358670 ATACTCAACGATTTCTGTGCAAAGATTACTGCACTTGATGGTGCCAACATTCTGCTGATT 358729 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 ||||| |||| || || |||||| | || ||| | ||| | ||||| || | ||| | Sbjct 358730 GCTCTTCCTGTTGCATGCATCCTTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGC 358789 Query 69435 TTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTC---TTGTAACGCTTCTC 69491 || || || | ||| | | | ||| | | || ||| ||| |||| || Sbjct 358790 CTCAATGATGGCGAACCACAGGGACTGAGCCT---TAACCGTCCGATTG----GCTTTTC 358842 Query 69492 TTT----TTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATC 69547 || || |||| || | | || ||||| || ||||||||||| | || | Sbjct 358843 CTTCGGCCTCGTATTTGAGGTACAATTGGTCAAATTCGTCGCCCCAAACATCCTGCAGGC 358902 Query 69548 CAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAA 69607 | ||||| | | || ||||||| ||||| |||| ||| ||| || ||||||| Sbjct 358903 CGGGACACTTGTGCGGGCACATCAGCGACCAGTTCTCATTTGCCTCAACGCGCTTCATAA 358962 Query 69608 ATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTG 69667 | ||||| || ||||| || || ||| | ||| | | | ||| ||||| || || | Sbjct 358963 AGAGATCAGGTATCCAGAGGGCATAAAATAAATCGCGAGCACGATTCTCTTCCTTACCGG 359022 Query 69668 TAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 69727 | || || || || || | || || | || ||| |||||||| || || | || || | Sbjct 359023 TGTTCTTCTTCAGTTCCAAGAATTCAAAAACATCGGAATGCCAGGGCTCCAAGTAGATGG 359082 Query 69728 CCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGA 69787 | | | | || || || || || |||||||| | ||| | || || || ||| Sbjct 359083 CAAAGGCGCCAGGGCGCTTGCCGCCACCCTGATCCACGTAACGCGCTACATTGTTGAAGA 359142 Query 69788 CTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTC 69847 ||| |||||| |||| | ||||| || | ||||| || ||| | || | | || Sbjct 359143 CTCGCAGCATGGGAACGAGGCCATTGGAGGTCCCATTCGTGCCACATATCGAGGTGCCCT 359202 Query 69848 TTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907 | || || || | | | || || || || || ||| || || || | |||| Sbjct 359203 TGGCACGGATGCAATGGACATTCAGGCCAATGCCGCCCGCCGACTTGGAAATCATGGCAC 359262 Query 69908 AACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAAC 69967 | ||| || | | | ||||| || || ||| | |||| | ||||| || | Sbjct 359263 AGTGTTCCACCGACTTGAAAATACCTTCGATCGAATCGGATGTCATAGTCAGAAGGAAGC 359322 Query 69968 AGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027 || || | ||| | | |||| | || || | || || || ||||| |||| Sbjct 359323 AGGACGAGAGTTGCGGTCGGTTAGTGGCAGCGGCGAACAGAGTGGGTGAGGCGTGTGTGA 359382 Query 70028 ACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGA 70086 | | || || |||| |||||| || |||| ||| | || ||||| ||| ||| Sbjct 359383 AGAAGCGCTCTGACAGCAAATTGTAGGTCTCAACAGCGGCATCGATATCTTCAC-CATGG 359441 Query 70087 ATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATT 70146 ||||| ||||| || ||||| | |||||| || || || || || | || ||| | Sbjct 359442 ATTCCAATCGCCACGCGCATTAGCATATGTTGCGGCCGCTCGACAATCTTGCCATTACTC 359501 Query 70147 TTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTT 70206 || | || || || ||| || || ||||| |||||||| ||||| |||||| | Sbjct 359502 TTAAGCAAATACGAACGTTCGAGGGTCTTAAAGCCAAAATAATTGTACCCAAAGTCACGA 359561 Query 70207 TCGTAAATAAT 70217 |||||||| || Sbjct 359562 TCGTAAATTAT 359572 >seq185 Length=662383 Score = 150 bits (166), Expect = 2e-31 Identities = 533/826 (65%), Gaps = 9/826 (1%) Strand=Plus/Plus Query 39329 TGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 39388 ||||| || || || ||||| ||||| || || ||||| |||| || || | ||| Sbjct 113994 TGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 114053 Query 39389 ATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAAT 39448 ||||| | ||||| || | | || || ||||| || || || || | || Sbjct 114054 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGG 114113 Query 39449 CTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTA 39508 | ||| || ||||| || ||||| ||| | || || ||||| || || || || Sbjct 114114 CGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTC 114173 Query 39509 ACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC--G 39566 || || || || || || | ||||| | ||| ||||| || || || || ||| | Sbjct 114174 ACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCTCG 114233 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAG-GCGAAG 39625 ||| | | ||| || |||| | |||| | ||| | ||||| | ||| || ||| Sbjct 114234 ATGATGCG--CTCGCGACGCGGTCGCTGCACCAGATGCTGGAACATCA-GCACCGCAAAG 114290 Query 39626 TCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATT 39685 || || || || ||||| || | || | ||||| || || || || |||||||| Sbjct 114291 TCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATC 114350 Query 39686 AGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCT 39745 || || ||||| || ||||| || || | ||||| || ||||||||||| || Sbjct 114351 AGGCCGCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTCG 114410 Query 39746 ACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT--ATG-TATCCACTTC 39802 || || |||||||||| | | |||||| | | | | || | | ||||| | Sbjct 114411 ACGGCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGGAGGAGATCCAGGAC 114470 Query 39803 TGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAA 39862 | ||||| |||||||| ||| || ||||| || || || |||||||| || || Sbjct 114471 AGGGCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGTAG 114530 Query 39863 TGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGG 39922 | | || ||| | || || || || | || ||| ||||| || |||||| Sbjct 114531 TCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATGG 114590 Query 39923 ATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCT 39982 | ||| || || || ||||| || || || || || | || || || || || ||||| Sbjct 114591 ACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTGCACCTCC 114650 Query 39983 GAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCC 40042 || || | || ||| || || || || || ||||| |||||||| || ||| Sbjct 114651 TGACTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAACGCC 114710 Query 40043 AATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCT 40102 | ||||| || |||| ||| || | | || |||||| | | ||| Sbjct 114711 AGCACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGTTAAATCC 114770 Query 40103 TTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 || || | ||| || ||||| | |||||||| || ||||| |||| Sbjct 114771 TTGGACAGATCCACCTCTTCCACGGTCCAAAAGGAGGCCTCGGCCT 114816 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686897156895840