Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq88 136 3e-27 seq185 125 6e-24 seq456 105 5e-18 seq1170 98.7 8e-16 >seq88 Length=741404 Score = 136 bits (150), Expect = 3e-27 Identities = 341/509 (67%), Gaps = 13/509 (3%) Strand=Plus/Minus Query 19430 CCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || || || ||||| | ||| | | || ||||| || ||||||| | |||| Sbjct 538310 CCAAAGATCGTTAACGGTCCACAGATCCTGGACAAGTATGTCGGCGAATCGGAGGCAAAT 538251 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 | ||||| || || || || || || || || | || || || || | ||| ||| Sbjct 538250 ATTCGACGCTTATTCGCGGAAGCCGAGGAGGAGGAGAAGCGCTTGGGACCCAACAGTGGA 538191 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC--TGG-T 19605 |||||||| || || | ||||| | || || || || ||| | || || ||| | Sbjct 538190 TTGCACATCATCATCTTCGATGAGATCGATGCTATATGCAAGGCTCGTGGCTCGGTGGCT 538131 Query 19606 GTAAAT---GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 | |||| || || || || || || ||||||||||| ||| | ||| | || ||||| Sbjct 538130 GGAAATAGCGGTGTCCACGATACGGTGGTCAATCAACTGCTGGCCAAAATCGATGGTGTG 538071 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || ||||| ||||||||||| || || ||||| || || | ||| | || || Sbjct 538070 GAGCAGCTGAACAATATTTTAGTGATAGGTATGACCAACAGGCGGGACATGATCGATGAG 538011 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | || | ||||| || |||||| | | || || |||| | | || |||| Sbjct 538010 GCACTGCTAAGGCCCGGACGCTTGGAAGTCCAAATGGAGATTAGCCTGCCAAATGAGCAA 537951 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840 ||||| || | || | || |||| ||| ||| | |||||| | |||| || Sbjct 537950 GGACGCGTCCAGATCCTCAATATAC--ACACCAAGCGGATGCGAGACTTTAACAAGATAG 537893 Query 19841 ATGACGATGTAGATCTAGAA-GAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAA 19899 |||||| || | | || |||||||| || || || |||| |||||| ||||| Sbjct 537892 CCAGCGATGTGGA-CAACAACGAAATTGCGGCCAGGACAAAGAACTTTAGCGGTGCAGAG 537834 Query 19900 CTTGAGGGATTAGTGAGGGCCGCCCAATC 19928 || || ||||| || || || || ||||| Sbjct 537833 CTGGAAGGATTGGTCAGAGCGGCTCAATC 537805 >seq185 Length=662383 Score = 125 bits (138), Expect = 6e-24 Identities = 347/528 (66%), Gaps = 7/528 (1%) Strand=Plus/Minus Query 43755 AGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGG-ATT 43813 |||| || |||||||| | ||||| || ||| || | || || ||| | | ||| || Sbjct 114810 AGGCCTCCTTTTGGACCGTGGAAGAGGTGGATCTGTCCAAGGATTTAACCGACTGGCATC 114751 Query 43814 GCATTAAA-ACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAG 43872 || |||| | || ||| ||||| || || || ||||||| ||||| || Sbjct 114750 GCCTTAAGGATGAC--GAACGTCATTTCATCTCCCATGTGCTGGCGTTCTTTGCCGCCTC 114693 Query 43873 CGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGA 43932 ||| || || ||||| || || |||| || || || || || || | |||| Sbjct 114692 CGATGGCATCGTCAACGAGAACCTGGTCGAGCGTTTCAGTCAGGAGGTGCAGATCACAGA 114633 Query 43933 AGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAG 43992 || || || || ||||| || || || ||||| || || | |||||||| |||||||| Sbjct 114632 GGCCCGCTGCTTCTATGGCTTCCAGATCGCCATGGAGAACGTCCATTCGGAGATGTACAG 114573 Query 43993 TCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGAT 44052 | | ||||| || || |||||| ||| ||| || | | |||||||||| || Sbjct 114572 TGTGCTGATCGACACTTACATCCGGGATCCGCATCAGCGGGACTACCTGTTTAATGCCAT 114513 Query 44053 AGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCAAA 44112 || || | || ||| | || | ||||| ||||||||||| ||||| || || Sbjct 114512 CGAGACCATGCCGGCGGTGAAGCGCAAAGCTGACTGGGCCCTGTCCTGGATCTCCTCCAA 114453 Query 44113 ---TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC 44169 || |||||||| || | | || ||||| | || || ||||| ||||| Sbjct 114452 GTCTGCCAACTTTGGAGAGCGGATCATTGCATTTGCCGCCGTCGAGGGCATCTTCTTCAG 114393 Query 44170 AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229 || ||||| | || || ||| | ||||| || || |||||||||| |||| || Sbjct 114392 CGGCAGCTTTGCCTCTATTTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTGACCTT 114333 Query 44230 TTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 || || ||| | || || || || || | || ||||| ||||| Sbjct 114332 CTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGC 114285 >seq456 Length=879863 Score = 105 bits (116), Expect = 5e-18 Identities = 338/518 (65%), Gaps = 11/518 (2%) Strand=Plus/Minus Query 19430 CCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 ||||| || || ||||| || | || || | |||||||| ||| | ||||| | ||| Sbjct 9736 CCAAAGATAGTCAATGGACCGCAGATATTGGACAAATATGTGGGTGAGTCGGAGGCGAAT 9677 Query 19489 GTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTTCT 19548 || || | ||||||| || || || || || | || || | |||| || ||| Sbjct 9676 GTTCGCAGGCTGTTTGCCGAGGCCGAGGAGGAGGAGAAGCGCCTCGGGCCGAATAGTGGA 9617 Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT--TCTGGT- 19605 ||||||| || || | ||||| | || || || || ||||| | || | ||| Sbjct 9616 CTGCACATCATCATCTTCGATGAGATCGATGCGATTTGCAAGCAGCGTGGCAGTGTGGCC 9557 Query 19606 -GTAAATG--GAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 |||| | | || || ||||| || |||||||| || ||| | || | || || ||| Sbjct 9556 GGTAATAGCGGTGTCCACGACACCGTCGTCAATCAGCTGCTGACCAAGATCGATGGCGTT 9497 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | || |||| ||||| | || ||||||||||| ||| | | ||| | || || Sbjct 9496 GATCAGTTGAACAATATCCTTGTCATTGGCATGACCAATCGTCGGGATATGATCGATGAG 9437 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTACCCGATGAATGT 19782 || | | ||||| ||||| ||||| | | || || || | | || |||| Sbjct 9436 GCTCTCCTGCGACCGGGTCGCCTGGAAGTTCAAATGGAGATCAGTCTGCCGAATGAGCAG 9377 Query 19783 GGACGTGTGGAAATTTTAAACATACATACATCAACC--ATGCGACAAAATAACCTTTTAA 19840 |||||||| | ||| | ||||| ||||| || | ||| | | |||| | | Sbjct 9376 GGACGTGTCCAGATTCTCAACATTCATAC--GAAGCGGATGAGGGACTTTAACAAGATCA 9319 Query 19841 ATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACTATAGCGGCGCAGAAC 19900 | || ||||| ||| | || |||||||| || || |||| ||| ||||| || | Sbjct 9318 ACGATGATGTGGATAACAAGGAGATTGCAGCTCTGACGAAGAACTTTAGTGGCGCCGAGC 9259 Query 19901 TTGAGGGATTAGTGAGGGCCGCCCAATCAATTGCAATG 19938 | ||||| | ||| | || ||||| || | ||| ||| Sbjct 9258 TGGAGGGTCTGGTGCGTGCTGCCCAGTCCAGTGCCATG 9221 >seq1170 Length=5152482 Score = 98.7 bits (108), Expect = 8e-16 Identities = 213/319 (67%), Gaps = 0/319 (0%) Strand=Plus/Minus Query 41096 TGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTT 41155 ||| |||||||| ||||| |||| || || | ||| ||||| || || || || || Sbjct 3759263 TGGCGAACTGTCCTGTCAGCTGTACCAGAGGAGCGCTGATATGGGCCTGGGCGTACCTTT 3759204 Query 41156 TAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACC 41215 ||||| || || || |||||||| | ||||| || || || || | | ||||| Sbjct 3759203 CAACATCGCTTCCTACGCCCTGCTCACCCACATGATAGCCCATGTGACTGGTCTGAAACC 3759144 Query 41216 TGGTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTT 41275 || || || ||||| || | || || ||| | ||| | || || | || ||| | Sbjct 3759143 CGGCGACTTCGTTCATACCATGGGTGACACGCATGTCTACCTAAACCATGTGGACCCGCT 3759084 Query 41276 AACAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGT 41335 || || || ||| || | || | | ||||||| || | || || ||| || Sbjct 3759083 AAAGGAGCAGCTGCAGCGCACGCCGCGCACGTTTCCAAAACTGGTGATCAAGCGCAAGGT 3759024 Query 41336 TGAAAACATTGATGATTTTTGCATCGATGATTTTGTCGTTTGCGATTACAATCCGTACCC 41395 | ||||||| || ||| || | || || |||| | |||||||||||| ||||| Sbjct 3759023 GCAGGACATTGAGGACTTTCGCTTTGAGGACTTTGAGATAGTCGATTACAATCCCTACCC 3758964 Query 41396 TAAAATCCACATGGACATG 41414 |||||||| ||||| ||| Sbjct 3758963 AAAAATCCAGATGGAAATG 3758945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397449431542780