Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq991 120 4e-22 seq809 93.3 5e-14 >seq991 Length=691118 Score = 120 bits (132), Expect = 4e-22 Identities = 448/693 (65%), Gaps = 21/693 (3%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 ||||| ||||| ||||| || || ||| |||| ||||| |||| || || || ||||| Sbjct 358101 TAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGCCCATTATCTGGGCAGTGGAT 358160 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || |||||||| || || | || ||| ||| | | ||| | | |||||| ||| Sbjct 358161 GCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACACCATGTTTCTTGATCGACTCC 358220 Query 110828 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTC-ACCTT--CCCACATGTCAAACTGA 110884 || || ||||||| || || || ||| ||||| ||||||| || ||||| Sbjct 358221 TTCAGCTTGGCCCAGTCCCAG---AGGTTCGTTGGGACCTTGTCCCACATATCGTACTGA 358277 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | || | | ||||| ||||| | |||||||| | ||||| ||| | ||| Sbjct 358278 AGAATTCCCTTGCTTACGGGACTGCCCTCGTATGTTTCATACGGACCTTCGGCCTGGGCC 358337 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA-- 111002 | |||||| || || ||||| | | | ||| || ||||||||||| | || | Sbjct 358338 AGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCAAAGATCTGCTGGTTTAGG 358397 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 ||| || || || || | | | | | || ||| || |||| || | || Sbjct 358398 AGACCT--GCCTCCTCGCTTTCGTAAGGGAATCTCATCAGAATCAAGGCATCAGCAAAAC 358455 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT-CAACG 111121 | |||| || | ||||| || | || | || ||| || || || || ||| | | Sbjct 358456 CCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGATTTCCGGGC-CTCTGGCAGG 358514 Query 111122 GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCA 111181 |||||| |||| ||||||| | || ||||| || | || |||| |||| || Sbjct 358515 GGATAATAATTGATGTCAATAATCTTATTCAGATTCTTAGCCACTGTCTTAGTGACCTCC 358574 Query 111182 TGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCA---TTGACATACTTTGGAAGGGCG 111238 | ||||| | | | || || | |||| ||| | || || | || ||| Sbjct 358575 TTCAGTTTCTTAAAGTC----GTAC--GTCTTCTCAGGGGTCACGAACATGTTGAGAGCG 358628 Query 111239 ATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTA 111298 || ||||||| |||||||| || | || || | ||||| | |||||||| Sbjct 358629 ATGGATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAATACTCAACGATTTCTGTG 358688 Query 111299 CATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCA 111358 || | || | ||| || || || | ||||| || || |||||| ||||||| ||| Sbjct 358689 CAAAGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCATGCA 358748 Query 111359 TCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCC 111391 |||||| | ||||| || || | || |||||| Sbjct 358749 TCCTTGAACAGCATATAAGGATTGCCAGTCTCC 358781 >seq809 Length=626019 Score = 93.3 bits (102), Expect = 5e-14 Identities = 181/262 (69%), Gaps = 4/262 (2%) Strand=Plus/Minus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 || || ||||| | || |||||||| || ||||||| ||||| || |||||||||||| Sbjct 272635 TCCTTGCCACCGGTCAGTCGCGTACCGAACTGACCACGGGGCTCCAGCAGGTTAATGTTG 272576 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924 || || || | ||| | |||||| ||||||||||| || | || || || || || Sbjct 272575 TTGGAGCCGACAAAGTTCTGGGCCAAATTAACGATGGTCATTTG-GAGCGAGACCTCGCC 272517 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAA-CTGTGCCACCTTCATTTCAT 181983 ||| || || || ||| | || || || | |||| || ||| || || |||| || Sbjct 272516 GTGATGATAGGCGGACATTTCGGCCAC-TGAGCCGGAAAGCTGCGCTACTTTCACCTCCC 272458 Query 181984 CTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCAT 182043 || |||| | | |||||| | ||||||| || | ||| ||||| || |||| Sbjct 272457 GCTTATCGTTCCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCCGGCTTAAGGCCAT 272398 Query 182044 CCGCCATATGGGCAATAGAGCG 182065 | ||| || ||| ||||| Sbjct 272397 CGACCAGGCTGGGAATGGAGCG 272376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628021354857600