Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14]
1,356 sequences; 198,035,861 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq185 165 1e-35
seq991 125 9e-24
>seq185
Length=662383
Score = 165 bits (182), Expect = 1e-35
Identities = 307/448 (69%), Gaps = 2/448 (0%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
|| || || ||| |||||| || ||||| ||||| ||||||| ||| |||||||
Sbjct 113997 TACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCATG 114056
Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847
|| | || |||||||| | ||| | ||| | || || | || ||| || |||
Sbjct 114057 AAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGGCGA 114116
Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907
|| | || |||||||||||| ||||| ||| ||||||| ||||| || || ||
Sbjct 114117 TCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATT-CAC 114175
Query 129908 GGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966
||| || || || | |||| ||| |||||||||||||| || || | ||| ||
Sbjct 114176 GGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCTCGAT 114235
Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTG 130026
||| ||| | |||| | || | || ||| | ||| ||||| ||
Sbjct 114236 GATGCGCTCGCGACGCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCGCA 114295
Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086
||| ||||||||||| ||||||||||| || || |||||| ||| || ||||| || ||
Sbjct 114296 GTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGGCC 114355
Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146
|||||||||| ||||||||| | ||| ||| ||||||||| ||||| ||
Sbjct 114356 GCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTCGACGGC 114415
Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG 130174
|| || |||| || ||||| |||||
Sbjct 114416 GGCAAATGCAATGATCCGCTCTCCAAAG 114443
>seq991
Length=691118
Score = 125 bits (138), Expect = 9e-24
Identities = 680/1072 (63%), Gaps = 25/1072 (2%)
Strand=Plus/Plus
Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864
||||||| |||| |||| | ||| | ||||| |||||||| || || || || |
Sbjct 357724 TGAACTGTATGGCGTTCGCAGCCGGCTTCGTGCGGAGATAGTACATTCCGGTTTTAAGGC 357783
Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924
| |||||| | || | ||| || || | || |||| | ||||| || || |
Sbjct 357784 CAGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCC-ATAGTTGGGCTCGGCAACA 357842
Query 117925 AGAG-GTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983
|| ||| | ||| ||||||||||| || |||||||| ||||| | |||
Sbjct 357843 TGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGATCCGCAGCCATTTTAATG 357902
Query 117984 ACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043
||| | ||| |||||||| ||| |||| || | | || | |||||
Sbjct 357903 GTGGACTTGACGGAGATCTCCCACACCGTCTTGTACAGATCGCGCACATGCTGGGGGATG 357962
Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTG--ACCATGAGATCCTTCATATCCTTTG 118101
|| ||||||| || || || ||| || || | | || | | ||||||||| |
Sbjct 357963 GCCTCGATATTCTGAATTGAGCCA--CGGCTGGAAATTATCTGGTTCTTCATATCATCAT 358020
Query 118102 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 118161
||| | ||| || | |||||| || || || | || || || || || |
Sbjct 358021 CCCACAAGTCAAGCTCCGTCAGATCCCTCAACAGGTGGTGGTTAACCACCTGGAATTCGC 358080
Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221
| | ||| ||||| ||||||||| || ||||| ||||| ||| | || || || |
Sbjct 358081 CGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGC 358140
Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281
||| || ||||| ||||| || || |||||||| || | || || ||| | || ||
Sbjct 358141 CCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACAC 358200
Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 118341
| | || | | || ||||| || | ||||||| || | | ||| || |
Sbjct 358201 CATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAGAGGTTCGTTGGGACCTTGT 358260
Query 118342 GCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401
||||||||| |||| || || || | | | || ||||| |||| ||||| |
Sbjct 358261 CCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTGCCCTCGTATGTTTCATACG 358320
Query 118402 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAA 118461
| || || ||| |||| ||| | || || || || || | | ||| || |||||||
Sbjct 358321 GACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCAA 358380
Query 118462 AAATGCG-AGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATA 118520
| || | | || | | | ||||| ||| || | | || || || |||
Sbjct 358381 AGATCTGCTGGTTTAGGAGACCT-GCCTCCTCGCTTTCGTAAGGGAATCTCATCAGAATC 358439
Query 118521 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC 118580
|| |||| || | ||| || | || | |||||| |||||||| |||| ||| || |||
Sbjct 358440 AAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGATTTC 358499
Query 118581 CGAGCGGTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 118639
|| || ||| || ||||||| |||| | || |||| | |||| ||||| || | ||
Sbjct 358500 CGGGC-CTCTGGCAGGGGATAATAATTGATGTCAATAATCTTATTCAGATTCTTAGCCAC 358558
Query 118640 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGAC 118696
||| |||| || | || |||| | ||| | |||| ||| | ||
Sbjct 358559 TGTCTTAGTGACCTCCTTCAG--TTTC----TTAAAGTCGTACGTCTTCTCAGGGGTCAC 358612
Query 118697 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 118756
|| | || ||||| || ||||| || || || | | | || || | ||
Sbjct 358613 GAACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAATA 358672
Query 118757 CTCTATAATTTCCGTGCACAAGTTTGAACT---CTTAATGGTGCCCAAGTTCTTTTGATT 118813
||| | ||||| ||||| ||| || ||| ||| |||||||| | |||| |||||
Sbjct 358673 CTCAACGATTTCTGTGCA-AAGATT--ACTGCACTTGATGGTGCCAACATTCTGCTGATT 358729
Query 118814 TGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 118865
||| |||| || ||||||||| | ||||| || || | || ||||||
Sbjct 358730 GCTCTTCCTGTTGCATGCATCCTTGAACAGCATATAAGGATTGCCAGTCTCC 358781
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618424717523360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |