Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq185 165 1e-35 seq991 125 9e-24 >seq185 Length=662383 Score = 165 bits (182), Expect = 1e-35 Identities = 307/448 (69%), Gaps = 2/448 (0%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| |||||| || ||||| ||||| ||||||| ||| ||||||| Sbjct 113997 TACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCATG 114056 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACGA 129847 || | || |||||||| | ||| | ||| | || || | || ||| || ||| Sbjct 114057 AAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGGCGA 114116 Query 129848 TCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACAT 129907 || | || |||||||||||| ||||| ||| ||||||| ||||| || || || Sbjct 114117 TCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATT-CAC 114175 Query 129908 GGG-AGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 ||| || || || | |||| ||| |||||||||||||| || || | ||| || Sbjct 114176 GGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCTCGAT 114235 Query 129967 AATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCTG 130026 ||| ||| | |||| | || | || ||| | ||| ||||| || Sbjct 114236 GATGCGCTCGCGACGCGGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGTCGCA 114295 Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| ||||||||||| ||||||||||| || || |||||| ||| || ||||| || || Sbjct 114296 GTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCAGGCC 114355 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||||| ||||||||| | ||| ||| ||||||||| ||||| || Sbjct 114356 GCGCTTCTTCAGCCAGAAAATAGAGGCAAAGCTGCCGCTGAAGAAGATGCCCTCGACGGC 114415 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || |||| || ||||| ||||| Sbjct 114416 GGCAAATGCAATGATCCGCTCTCCAAAG 114443 >seq991 Length=691118 Score = 125 bits (138), Expect = 9e-24 Identities = 680/1072 (63%), Gaps = 25/1072 (2%) Strand=Plus/Plus Query 117805 TGAACTGAATGGGTCTCGCCTTGGCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCC 117864 ||||||| |||| |||| | ||| | ||||| |||||||| || || || || | Sbjct 357724 TGAACTGTATGGCGTTCGCAGCCGGCTTCGTGCGGAGATAGTACATTCCGGTTTTAAGGC 357783 Query 117865 CCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGGAGAGGGTTGGACTTTCCATGA 117924 | |||||| | || | ||| || || | || |||| | ||||| || || | Sbjct 357784 CAGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCC-ATAGTTGGGCTCGGCAACA 357842 Query 117925 AGAG-GTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATATCAATC 117983 || ||| | ||| ||||||||||| || |||||||| ||||| | ||| Sbjct 357843 TGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGATCCGCAGCCATTTTAATG 357902 Query 117984 ACATCCTTCATCTTGATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATA 118043 ||| | ||| |||||||| ||| |||| || | | || | ||||| Sbjct 357903 GTGGACTTGACGGAGATCTCCCACACCGTCTTGTACAGATCGCGCACATGCTGGGGGATG 357962 Query 118044 TCCACGATATTTTGGATGGATCCACCCGCCTTG--ACCATGAGATCCTTCATATCCTTTG 118101 || ||||||| || || || ||| || || | | || | | ||||||||| | Sbjct 357963 GCCTCGATATTCTGAATTGAGCCA--CGGCTGGAAATTATCTGGTTCTTCATATCATCAT 358020 Query 118102 ACCAGAGACCAATCTTTTTGAGATCCTCCACGAGATGCTTATTGACAACAACAAACTCAC 118161 ||| | ||| || | |||||| || || || | || || || || || | Sbjct 358021 CCCACAAGTCAAGCTCCGTCAGATCCCTCAACAGGTGGTGGTTAACCACCTGGAATTCGC 358080 Query 118162 CCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTAC 118221 | | ||| ||||| ||||||||| || ||||| ||||| ||| | || || || | Sbjct 358081 CGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGC 358140 Query 118222 CCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGAC 118281 ||| || ||||| ||||| || || |||||||| || | || || ||| | || || Sbjct 358141 CCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACAC 358200 Query 118282 CCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT 118341 | | || | | || ||||| || | ||||||| || | | ||| || | Sbjct 358201 CATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAGAGGTTCGTTGGGACCTTGT 358260 Query 118342 GCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATG 118401 ||||||||| |||| || || || | | | || ||||| |||| ||||| | Sbjct 358261 CCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTGCCCTCGTATGTTTCATACG 358320 Query 118402 GGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAA 118461 | || || ||| |||| ||| | || || || || || | | ||| || ||||||| Sbjct 358321 GACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCAA 358380 Query 118462 AAATGCG-AGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATA 118520 | || | | || | | | ||||| ||| || | | || || || ||| Sbjct 358381 AGATCTGCTGGTTTAGGAGACCT-GCCTCCTCGCTTTCGTAAGGGAATCTCATCAGAATC 358439 Query 118521 AATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTC 118580 || |||| || | ||| || | || | |||||| |||||||| |||| ||| || ||| Sbjct 358440 AAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGATTTC 358499 Query 118581 CGAGCGGTCT-CCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGAC 118639 || || ||| || ||||||| |||| | || |||| | |||| ||||| || | || Sbjct 358500 CGGGC-CTCTGGCAGGGGATAATAATTGATGTCAATAATCTTATTCAGATTCTTAGCCAC 358558 Query 118640 AACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCA---TTGAC 118696 ||| |||| || | || |||| | ||| | |||| ||| | || Sbjct 358559 TGTCTTAGTGACCTCCTTCAG--TTTC----TTAAAGTCGTACGTCTTCTCAGGGGTCAC 358612 Query 118697 ATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTA 118756 || | || ||||| || ||||| || || || | | | || || | || Sbjct 358613 GAACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAATA 358672 Query 118757 CTCTATAATTTCCGTGCACAAGTTTGAACT---CTTAATGGTGCCCAAGTTCTTTTGATT 118813 ||| | ||||| ||||| ||| || ||| ||| |||||||| | |||| ||||| Sbjct 358673 CTCAACGATTTCTGTGCA-AAGATT--ACTGCACTTGATGGTGCCAACATTCTGCTGATT 358729 Query 118814 TGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCC 118865 ||| |||| || ||||||||| | ||||| || || | || |||||| Sbjct 358730 GCTCTTCCTGTTGCATGCATCCTTGAACAGCATATAAGGATTGCCAGTCTCC 358781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618424717523360