Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq991 185 1e-41 seq185 147 2e-30 >seq991 Length=691118 Score = 185 bits (204), Expect = 1e-41 Identities = 503/765 (66%), Gaps = 20/765 (3%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTA-GAAACCTCGATGATTTCTGTGCA 79115 |||||||||||||| ||||| | ||||| |||| | ||| ||| | |||||||||||| Sbjct 358632 GATGCCAGGTTGCAAACGGCGATTTCGTC-GGGCGACGAATACTCAACGATTTCTGTGCA 358690 Query 79116 CAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTC 79175 | |||| ||||||||||||| | |||| ||| ||||||||| ||| || || || Sbjct 358691 AAGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCATGCATC 358750 Query 79176 CTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGAT 79235 |||| | ||| || || | || ||||| ||||| || | | | || ||| | Sbjct 358751 CTTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTCAATGATGGCGAACCACAG 358810 Query 79236 GTCCCGGGCCCGGACAACCTTC---TTGTACCGACCCTGTGCGACGTACGTCCGGTACAA 79292 | | | ||| |||| || ||| || | || |||| | ||||||| Sbjct 358811 GGACTGAGCCTT---AACCGTCCGATTGGCTTTTCCTTCGGCCTCGTATTTGAGGTACAA 358867 Query 79293 CTCGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAG 79352 | || || | || || | ||||| ||||||| || |||| ||||||||||||||| Sbjct 358868 TTGGTCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACACTTGTGCGGGCACATCAG 358927 Query 79353 GTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT 79412 ||||| ||| | |||||| || ||| ||||| || || ||||| ||||| Sbjct 358928 CGACCAGTTCTCATTTGCCTCAACGCGCTTCATAAAGAGATCAGGTATCCAGAGGGCATA 358987 Query 79413 GAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTC 79472 || | ||||| ||| |||| || | || |||| ||| || | || || Sbjct 358988 AAATAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCTTCTTCAGTTCCAAGAATTC 359047 Query 79473 CATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCC 79532 | | |||| ||||| ||||||| |||||||| || | || |||||||||||| Sbjct 359048 AAAAACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGGCGCCAGGGCGCTTGCCGCC 359107 Query 79533 GCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTC 79592 ||||| | ||||| || || |||||||| ||||| |||||||| |||| ||| | Sbjct 359108 ACCCTGATCCACGTAACGCGCTACATTGTTGAAGACTCGCAGCATGGGAACGAGGCCATT 359167 Query 79593 GGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGG-- 79650 || | || ||||| || || || || | || || || ||| ||| Sbjct 359168 GGAGGTCCCATTCGTGCCACATATCGAGGTGCCCTTGGCACGGAT------GCAATGGAC 359221 Query 79651 ATT----CCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTA 79706 ||| || ||||| || | | ||||||| || || || | | | || || | | Sbjct 359222 ATTCAGGCCAATGCCGCCCGCCGACTTGGAAATCATGGCACAGTGTTCCACCGACTTGAA 359281 Query 79707 GATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTT 79766 || || |||||||| ||| |||||| | ||||||||| ||| | || || Sbjct 359282 AATACCTTCGATCGAATCGGATGTCATAGTCAGAAGGAAGCAGGACGAGAGTTGCGGTCG 359341 Query 79767 GTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAA 79811 ||| || | ||| ||| || || || | ||||| |||||||| Sbjct 359342 GTTAGTGGCAGCGGCGAACAGAGTGGGTGAGGCGTGTGTGAAGAA 359386 Score = 116 bits (128), Expect = 4e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 78475 AGATCCCGGACCAGGTGCCGGTTAATCATGACGAACTCGCCGGCCAGGGTCCGGCGCAGG 78534 ||||||| | |||||| |||||| || ||| ||||||| || || || Sbjct 358041 AGATCCCTCAACAGGTGGTGGTTAACCACCTGGAATTCGCCGGAGAGAACGCGTCGTGTA 358100 Query 78535 TAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAG 78594 ||||| || || |||||||||||||| | ||||| || ||||| |||||||| || || Sbjct 358101 TAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGCCCATTATCTGGGCAGTGGAT 358160 Query 78595 GCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGATC 78648 || || |||||||| |||||||| ||||| |||| | |||||| |||||||| Sbjct 358161 GCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACACCATGTTTCTTGATC 358214 Score = 100 bits (110), Expect = 3e-16 Identities = 340/530 (64%), Gaps = 0/530 (0%) Strand=Plus/Minus Query 19419 TCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCA 19478 |||| || ||||| || ||||||||||| || | ||||| | ||||| ||||||| Sbjct 359160 TCGTTCCCATGCTGCGAGTCTTCAACAATGTAGCGCGTTACGTGGATCAGGGTGGCGGCA 359101 Query 19479 AACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCC 19538 | ||| ||| | || ||||||||| | ||||| ||||| | || || | || ||| Sbjct 359100 AGCGCCCTGGCGCCTTTGCCATCTACTTGGAGCCCTGGCATTCCGATGTTTTTGAATTCT 359041 Query 19539 TCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCT 19598 | |||||| |||| ||| | || |||| || |||||| | || ||| Sbjct 359040 TGGAACTGAAGAAGAACACCGGTAAGGAAGAGAATCGTGCTCGCGATTTATTTTATGCCC 358981 Query 19599 TGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGT 19658 | ||||| || || || || ||| || |||||| | || | ||| ||||||| Sbjct 358980 TCTGGATACCTGATCTCTTTATGAAGCGCGTTGAGGCAAATGAGAACTGGTCGCTGATGT 358921 Query 19659 GCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACC 19718 |||||||| | || || ||||| | || || | ||||| | || | | ||||||| Sbjct 358920 GCCCGCACAAGTGTCCCGGCCTGCAGGATGTTTGGGGCGACGAATTTGACCAATTGTACC 358861 Query 19719 GGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTGGGACC 19778 | |||| ||| | || ||| | ||| ||| | | | | ||| | Sbjct 358860 TCAAATACGAGGCCGAAGGAAAAGCCAATCGGACGGTTAAGGCTCAGTCCCTGTGGTTCG 358801 Query 19779 GCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGA 19838 | || | | ||||| ||||| |||| || || ||| | |||||| || | Sbjct 358800 CCATCATTGAGGCGCAGGTGGAGACTGGCAATCCTTATATGCTGTTCAAGGATGCATGCA 358741 Query 19839 ACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAA 19898 || ||| |||||| |||| | ||| | ||||||| || || || || |||| Sbjct 358740 ACAGGAAGAGCAATCAGCAGAATGTTGGCACCATCAAGTGCAGTAATCTTTGCACAGAAA 358681 Query 19899 TCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 || | ||| ||| ||| ||||| | ||||| || || ||||| ||| Sbjct 358680 TCGTTGAGTATTCGTCGCCCGACGAAATCGCCGTTTGCAACCTGGCATCC 358631 Score = 89.7 bits (98), Expect = 6e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 20356 GATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGAC 20415 |||||||| || || | | ||||| |||| ||||| |||||||| || || || || Sbjct 358214 GATCAAGAAACATGGTGTCAGGAACTCTCTGCTGGTCGCCCCCATGCCAACGGCATCCAC 358155 Query 20416 CGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTA 20469 |||||||| ||||| || ||||| | |||||||||||||| || || ||||| Sbjct 358154 TGCCCAGATAATGGGCAATAACGAATCCTTCGAGCCGTACACCACAAATATCTA 358101 >seq185 Length=662383 Score = 147 bits (162), Expect = 2e-30 Identities = 319/469 (68%), Gaps = 9/469 (2%) Strand=Plus/Minus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 |||| | | || |||| || ||||| ||| || || ||||||||| ||| || Sbjct 114442 TTTGGAGAGCGGATCATTGCATTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGCAGCTTT 114383 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 ||||||||||||| || ||||| ||||| ||||| ||||||| |||||||||||| Sbjct 114382 GCCTCTATTTTCTGGCTGAAGAAGCGCGGCCTGATGCCTGGCCTGACCTTCTCCAACGAG 114323 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCA-CACCT 60151 || || ||||| |||||||| || || || ||||| ||| | | | | || || || Sbjct 114322 CTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCGGTGCTGATGT-TCCAGCATCT 114264 Query 60152 ATTGGAAAAATGCCCTTCCAAGGATATTCACAAGATTGTTCAGTG-GGCT-TGTGAAGTG 60209 || | | | | | || || | |||| ||| ||| ||| || | || Sbjct 114263 GGTGCAGCGACCGCGTCGCGAGCGCATCATCGAGATCATTC-GTGACGCTGTGGACATTG 114205 Query 60210 GAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAA 60269 | || |||||| | || || || || || || || || || ||| || | | Sbjct 114204 AACAG-GAGTTCTTGACCGATGCCCTGCCCGTGAATCTGATCGGCATGAACTGCGACCTA 114146 Query 60270 ATGACGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCA 60329 ||| ||||||||||| ||||||| || || ||||| | | | |||| || | ||| | Sbjct 114145 ATGTCGCAGTACATTGAGTTTGTGGCTGATCGCCTGCTCGTCGAGTTGGGCGTTGGAAAA 114086 Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | || ||||| ||| ||| ||||||| |||||| |||| || |||||| Sbjct 114085 ATCTACAACACCAAGAACCCGTTCAACTTCATGGAGATGATCTCGCTGGACGGCAAGACC 114026 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTATTCAAAGCACATGGTCGTCG 60438 ||||| ||||||||| ||| || || || ||| ||||| ||||| Sbjct 114025 AACTTTTTTGAGAAGAAGGTGGGCGAGTA---CCAGCGCATGGGCGTCG 113980 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548515502504640