Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq991 394 1e-104 seq185 114 2e-20 >seq991 Length=691118 Score = 394 bits (436), Expect = 1e-104 Identities = 1210/1846 (66%), Gaps = 40/1846 (2%) Strand=Plus/Plus Query 76803 GCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACT-CCATCCGTAGAA 76861 || || || || || ||||||||||| || ||||| || || || || ||| ||| || Sbjct 357744 GCCGGCTTCGTGCGGAGATAGTACATTCCGGTTTTAAGGCC-AGCCTTCCACGAGTAAAA 357802 Query 76862 ATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACT 76921 ||| ||| ||||| ||| ||| | || ||||| | |||||| || | ||| ||||| Sbjct 357803 ATGTATGGACGTCAGCTTGCCATAGTTGGGCTCGGCAACATGAATGTTGAACGATTGACT 357862 Query 76922 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGA-GGA-ATT 76979 ||||||||||| || || | ||| || |||||||| || ||| ||| || ||| || Sbjct 357863 CTGATCGATGAATGCACCACGATCCGCAGCCATTTTAATGGTGGACTT--GACGGAGATC 357920 Query 76980 TCCCAAATAGTTTTGAAAACTTGTTTGATATCAT-CTGGAAGGT----TTG-TATTTTGA 77033 ||||| | || ||| | | | | | ||| |||| | | | | |||| ||| Sbjct 357921 TCCCACACCGTCTTGTACA---GATCGCGCACATGCTGGGGGATGGCCTCGATATTCTGA 357977 Query 77034 ATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTCTCT 77093 || || |||| || || || ||||| |||||||||| |||||| | ||| Sbjct 357978 ATTGAGCCACGGCTGGAAATTATCTGGTTCTTCATATCATCATCCCACAAGTCAAGCTCC 358037 Query 77094 GTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTACGA 77153 || | | | || | || || | ||||| | || ||||| || || | || | || Sbjct 358038 GTCAGATCCCTCAACAGGTGGTGGTTAACCACCTGGAATTCGCCGGAGAGAACGCGTCGT 358097 Query 77154 GTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTA 77213 || || ||||| |||| || || || | ||||| || || |||| || || ||||| Sbjct 358098 GTATAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTATTGCCCATTATCTGGGCAGTG 358157 Query 77214 GAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTTA 77273 || || |||||||| || || |||| | | || |||| ||||||| | |||| Sbjct 358158 GATGCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTGACACCATGTTTCTTGATCGAC 358217 Query 77274 TCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGT 77333 || || || | ||| ||||| || | | || || ||||| | |||||| || Sbjct 358218 TCCTTCAGCTTGGCCCAGTCCCAGAGGTTCGTTGGGACCTTGTCCCACATATCGTACTGA 358277 Query 77334 AGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGGTCCTTCTGTTTCAGCT 77393 |||||||| || || | || | ||||||||||| || ||||| | | || Sbjct 358278 AGAATTCCCTTGCTTACGGGACTGCCCTCGTATGTTTCATACGGACCTTCGGCCTGGGCC 358337 Query 77394 AGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATT---G 77450 ||||||||||| ||||||| ||| || ||||| || ||||| || |||| || || | Sbjct 358338 AGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTTTCAAAGATCTGCTGGTTTAGG 358397 Query 77451 AGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAA-AGAATAAAGGCATCTGCTAA 77509 ||| || || || || || | || ||| | | ||||| |||||||| || || Sbjct 358398 AGACCT---GCCTCCTCGCTTTCGTAAGGG-AATCTCATCAGAATCAAGGCATCAGCAAA 358453 Query 77510 TCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAAT 77569 ||||||| ||||| ||||| || | ||| ||| ||| || | || ||||| | Sbjct 358454 ACCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTTGATTTCCGGGCCTCTGGCAG 358513 Query 77570 AGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTC 77629 ||||||||||| ||||| ||||| ||||| ||||| || | ||| ||| || || Sbjct 358514 GGGATAATAATTGATGTCAATAATCTTATTCAGATTCTTAGCCACTGTCTTAGTGACCTC 358573 Query 77630 CTTTAGTTTAAGAAAATC--AAATCTTC-CATCTATAACAAACATGTTCAAAGCTATAGA 77686 ||| ||||| ||| || | ||||| || | || |||||||| | ||| || || Sbjct 358574 CTTCAGTTTCTTAAAGTCGTACGTCTTCTCAGGGGTCACGAACATGTTGAGAGCGATGGA 358633 Query 77687 TGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAG 77746 ||| || || ||||| || | || | | | ||| | | || || || || || Sbjct 358634 TGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAATACTCAACGATTTCTGTGCAAAG 358693 Query 77747 ATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGCATGAGTCCTT 77806 |||||| || ||||| ||||| | ||| || || |||||||| | ||||||| ||||| Sbjct 358694 ATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGCTCTTCCTGTTGCATGCATCCTT 358753 Query 77807 ATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGA-CGA 77865 | || ||| | ||| | || || || | ||| | || || || | ||| | || Sbjct 358754 GAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCTCAATGATGGCGAACCACAGGGA 358813 Query 77866 CTCTAGCTTTTATCAT-AGATTTGTATCGCCTCTCTCTTTCATA-TTGAGTATATAGCCG 77923 || ||| || | | | |||| | | ||| || || || ||||| || | | Sbjct 358814 CT-GAGCCTTAACCGTCCGATTGGCTTTTCCT-TCGGCCTCGTATTTGAG-GTACAATTG 358870 Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 |||||||| || ||||||||||| | || || || || | | |||||||||| || Sbjct 358871 GTCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGACACTTGTGCGGGCACATCAGCGA 358930 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||||| ||| | ||| ||| || ||||||||||||||||||||||| || ||| ||| Sbjct 358931 CCAGTTCTCATTTGCCTCAACGCGCTTCATAAAGAGATCAGGTATCCAGAGGGCATAAAA 358990 Query 78044 TAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCAT 78103 || ||| || | | || ||||| || || || ||||| || || || | || || | Sbjct 358991 TAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCTTCTTCAGTTCCAAGAATTCAAA 359050 Query 78104 AATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCTCC 78163 || ||| |||||||| || || | || || || | | ||||| || || || || Sbjct 359051 AACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGGCGCCAGGGCGCTTGCCGCCACC 359110 Query 78164 CTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTAGA 78223 |||||| | || | || || || | |||| || ||| |||| | || || || Sbjct 359111 CTGATCCACGTAACGCGCTACATTGTTGAAGACTCGCAGCATGGGAACGAGGCCATTGGA 359170 Query 78224 TGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATAT--- 78280 || ||||| || ||| | || | | || | || || || |||||| || Sbjct 359171 GGTCCCATTCGTGCCACATATCGAGGTGCCCTTGGCACGGAT----GCAATGGACATTCA 359226 Query 78281 -CCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATAC 78339 || || || || ||| ||| || || | || || ||| || | | | | |||| Sbjct 359227 GGCCAATGCCGCCCGCCGACTTGGAAATCATGGCACAGTGTTCCACCGACTTGAAAATAC 359286 Query 78340 CCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAG 78399 | || || || |||| | ||||| || ||| || | ||| | | || Sbjct 359287 CTTCGATCGAATCGGATGTCATAGTCAGAAGGAAGCAGGACGAGAGTTGCGGTCGGTTAG 359346 Query 78400 TTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTGT 78459 | | || || | || || || || || || || | || || || | ||||| Sbjct 359347 TGGCAGCGGCGAACAGAGTGGGTGAGGCGTGTGTGAAGAAGCGCTCTGACAGCAAATTGT 359406 Query 78460 ATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAACA 78519 | || |||| ||| | || || || ||| ||||| | ||| || ||||| | || Sbjct 359407 AGGTCTCAACAGCGGCATCGATATCTTCACCATGGATTCCAATCGCCACGCGCATTAGCA 359466 Query 78520 TATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAG 78579 |||| || || | || || |||| ||| | || | ||| || || ||| | | Sbjct 359467 TATGTTGCGGCCGCTCGACAATCTTGCCATTACTCTTAAGCAAATACGAACGTTCGAGGG 359526 Query 78580 TTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 | ||||| |||||||| ||||| |||||| | |||||||| || Sbjct 359527 TCTTAAAGCCAAAATAATTGTACCCAAAGTCACGATCGTAAATTAT 359572 >seq185 Length=662383 Score = 114 bits (126), Expect = 2e-20 Identities = 524/825 (64%), Gaps = 11/825 (1%) Strand=Plus/Plus Query 47853 TGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTCC 47912 || || || ||||| ||||| ||||| || || ||||| |||| || || | ||| Sbjct 113994 TGGTACTCGCCCACCTTCTTCTCAAAAAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 114053 Query 47913 ATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAAATCAGT 47972 || || | || || || | || || |||||| || || || || | ||| Sbjct 114054 ATGAAGTTGAACGGGTTCTTGGTGTTGTAGATTTTTCCAACGCCCAACTCGACGAGCAGG 114113 Query 47973 CTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTA 48032 | ||| || || || || || || ||| | || || ||||| || || || || Sbjct 114114 CGATCAGCCACAAACTCAATGTACTGCGACATTAGGTCGCAGTTCATGCCGATCAGATTC 114173 Query 48033 ACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATC--G 48090 || || || || || || | ||||| ||||| || ||||| || || ||| | Sbjct 114174 ACGGGCAGGGCATCGGTCAAGAACTCCTGTTCAATGTCCACAGCGTCACGAATGATCTCG 114233 Query 48091 ATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCAAAAT 48150 ||| | | | | | | ||| | | || || ||| | ||||| | ||||| | Sbjct 114234 ATGATGCGCTCGCGACGC--GGTCGCTGCACCAGATGCTGGAACATCAGCACCGCAAAGT 114291 Query 48151 CACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTA 48210 | || || ||||| || || | || | ||||| || || || || || ||||| | Sbjct 114292 CGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGGCCAGGCATCA 114351 Query 48211 GTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAA-AAGAATATGCCTTCT 48269 | || || || || ||||| || || | || |||| | | | ||||| ||||| || Sbjct 114352 GGCCGCGCTTCTTCAGCCAGAAAATAGAGGC-AAAGCTGCCGCTGAAGAAGATGCCCTCG 114410 Query 48270 ACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGC----TTCGTTGTGTATCCACCG 48325 ||||| |||||||| | | | |||||| | |||| || | | | ||||| Sbjct 114411 ACGGCGGCAAATGCAATGATCCGCTCTCCAAAGTTGGCAGACTTGGAGGAG-ATCCAGGA 114469 Query 48326 TTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAA 48385 | ||||| ||||| || ||| || ||||| || || || |||||||| || | Sbjct 114470 CAGGGCCCAGTCAGCTTTGCGCTTCACCGCCGGCATGGTCTCGATGGCATTAAACAGGTA 114529 Query 48386 GtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTG 48445 || | || ||| | |||||| || || | | ||| ||||| || || || Sbjct 114530 GTCCCGCTGATGCGGATCCCGGATGTAAGTGTCGATCAGCACACTGTACATCTCCGAATG 114589 Query 48446 AATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 | || || || || ||||| || || || || || | || ||||||||||| ||||| Sbjct 114590 GACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGGGCCTCTGTGATCTGCACCTC 114649 Query 48506 CGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGC 48565 | || || || || ||| ||||| || || || ||||| || ||||| || || Sbjct 114650 CTGACTGAAACGCTCGACCAGGTTCTCGTTGACGATGCCATCGGAGGCGGCAAAGAACGC 114709 Query 48566 TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATC 48625 | ||||| || |||| ||||| | || || |||||| | | ||| Sbjct 114710 CAGCACATGGGAGATGAAATGACGTTCGTCATCCTTAAGGCGATGCCAGTCGGTTAAATC 114769 Query 48626 TTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGC 48670 || || | ||| || ||||| | |||||||| || ||||| || Sbjct 114770 CTTGGACAGATCCACCTCTTCCACGGTCCAAAAGGAGGCCTCGGC 114814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694657025363840