Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq991 372 4e-98 >seq991 Length=691118 Score = 372 bits (412), Expect = 4e-98 Identities = 1218/1864 (65%), Gaps = 34/1864 (2%) Strand=Plus/Plus Query 75377 GTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 75436 |||||||| |||| | || || || || || ||||||||||| || ||||| || Sbjct 357723 GTGAACTGTATGGCGTTCGCAGCCGGCTTCGTGCGGAGATAGTACATTCCGGTTTTAAGG 357782 Query 75437 CCCAGACT-CCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTAT 75495 || || || ||| ||| ||||| ||| || || ||| ||| | || ||||| | Sbjct 357783 CC-AGCCTTCCACGAGTAAAAATGTATGGACGTCAGCTTGCCATAGTTGGGCTCGGCAAC 357841 Query 75496 ATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTAT 75555 |||||| || | ||| ||||| ||||||||||| || || | ||| || |||||||| || Sbjct 357842 ATGAATGTTGAACGATTGACTCTGATCGATGAATGCACCACGATCCGCAGCCATTTTAAT 357901 Query 75556 AATGGTCTTTTGA-GGA-ATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCAT-CTGG 75612 ||| ||| || ||| || ||||| | || ||| | | | | | ||| |||| Sbjct 357902 GGTGGACTT--GACGGAGATCTCCCACACCGTCTTGTACA---GATCGCGCACATGCTGG 357956 Query 75613 AAGAT----TTG-TATTTTGAATGGATCCGCCATCAGATATAATTGTATTCTTGATCTCA 75667 ||| | | |||| ||||| || || | || || || ||||| || ||| Sbjct 357957 GGGATGGCCTCGATATTCTGAATTGAGCCACGGCTGGAAATTATCTGGTTCTTCATATCA 358016 Query 75668 TCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAATTTGAAAT 75727 |||| |||||| | ||| || | | | || | || || | ||||| | || ||| Sbjct 358017 TCATCCCACAAGTCAAGCTCCGTCAGATCCCTCAACAGGTGGTGGTTAACCACCTGGAAT 358076 Query 75728 TCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTG 75787 || || || | || | ||| || || ||||| |||| || || || | ||||| || Sbjct 358077 TCGCCGGAGAGAACGCGTCGTGTATAGATATTTGTGGTGTACGGCTCGAAGGATTCGTTA 358136 Query 75788 TTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTG 75847 || |||| || || ||||| || || || ||||| || || |||| | | || ||| Sbjct 358137 TTGCCCATTATCTGGGCAGTGGATGCCGTTGGCATGGGGGCGACCAGCAGAGAGTTCCTG 358196 Query 75848 AGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACA 75907 | ||||||| | |||| || || || | ||| ||||| || | | ||| || Sbjct 358197 ACACCATGTTTCTTGATCGACTCCTTCAGCTTGGCCCAGTCCCAGAGGTTCGTTGGGACC 358256 Query 75908 ACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATATGTTTCG 75967 ||||| | |||||| || |||||||| ||||| | || | |||||||| Sbjct 358257 TTGTCCCACATATCGTACTGAAGAATTCCCTTGCTTACGGGACTGCCCTCGTATGTTTCA 358316 Query 75968 TAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTT 76027 || | || || | || ||||| ||||| || || | || || ||||| || ||| Sbjct 358317 TACGGACCTTCGGCCTGGGCCAGTTCACAACTTGCTTCCAGTGCGCCATAATAGATAGTT 358376 Query 76028 TCGAAAATCTTCTTATTAAGAT--CTTGCGCTTCAAGACTATCAAAAGGATAATGTAAA- 76084 || || |||| || || || | ||| || | | || || |||| ||| | | Sbjct 358377 TCAAAGATCTGCTGGTTTAGGAGACCTGC-CTCCTCG-CTTTCGTAAGGG-AATCTCATC 358433 Query 76085 AGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTG 76144 ||||| || ||||| || | ||||||| ||||| ||||| || | ||| ||| ||| Sbjct 358434 AGAATCAAGGCATCAGCAAAACCCTGAATGCCAATGCCAATGGGGCGATGCCTCAAATTT 358493 Query 76145 GAAATTTCAG--CTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTTC 76202 || |||| | | ||||| | || |||||||| || || ||||| ||||| ||||| Sbjct 358494 GA--TTTCCGGGCCTCTGGCAGGGGATAATAATTGATGTCAATAATCTTATTCAGATTCT 358551 Query 76203 TGACAACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAA--TTTTC-CATCTATCA 76259 | | ||| ||| || ||||| ||||| ||| || | | ||| || ||| Sbjct 358552 TAGCCACTGTCTTAGTGACCTCCTTCAGTTTCTTAAAGTCGTACGTCTTCTCAGGGGTCA 358611 Query 76260 CAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATTGGCAT 76319 | ||||| || ||||| || ||||| || || |||||||| | || | | | || Sbjct 358612 CGAACATGTTGAGAGCGATGGATGCCAGGTTGCAAACGGCGATTTCGTCGGGCGACGAAT 358671 Query 76320 ATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTGGTTGC 76379 | | | || || ||||| |||||||| |||||||| || |||| ||| || || |||| Sbjct 358672 ACTCAACGATTTCTGTGCAAAGATTACTGCACTTGATGGTGCCAACATTCTGCTGATTGC 358731 Query 76380 TCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTGTGATT 76439 |||| |||| |||| ||||| | || | | | ||| | ||||| || | ||| | | Sbjct 358732 TCTTCCTGTTGCATGCATCCTTGAACAGCATATAAGGATTGCCAGTCTCCACCTGCGCCT 358791 Query 76440 CGATAATAGATTTCCAGACG-ACTCTAGCTTTTATTATA-GATTTG-TATCGCTTCTCTC 76496 | || || | ||| | | ||| ||| || | | |||| | | | |||| | Sbjct 358792 CAATGATGGCGAACCACAGGGACTG-AGCCTTAACCGTCCGATTGGCTTTTCCTTCGGCC 358850 Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556 | || ||| | || || | |||||||| || ||||||||||| | || || |||| Sbjct 358851 TCGTAT-TTGAGG-TACAATTGGTCAAATTCGTCGCCCCAAACATCCTGCAGGCCGGGAC 358908 Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616 | | | ||| ||||||| ||||| | ||| | ||| ||| || ||||||||||||| Sbjct 358909 ACTTGTGCGGGCACATCAGCGACCAGTTCTCATTTGCCTCAACGCGCTTCATAAAGAGAT 358968 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCT 76676 |||||||||| || ||| ||||| ||| || | | | ||||| || || || |||| Sbjct 358969 CAGGTATCCAGAGGGCATAAAATAAATCGCGAGCACGATTCTCTTCCTTACCGGTGTTCT 359028 Query 76677 TTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAA 76736 | || || || | ||| || | || ||| |||||||| || || | || || || | Sbjct 359029 TCTTCAGTTCCAAGAATTCAAAAACATCGGAATGCCAGGGCTCCAAGTAGATGGCAAAGG 359088 Query 76737 CACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCA 76796 | || || || || || |||||||| | || | || || || | |||| || Sbjct 359089 CGCCAGGGCGCTTGCCGCCACCCTGATCCACGTAACGCGCTACATTGTTGAAGACTCGCA 359148 Query 76797 ACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCAC 76856 ||| |||| | ||| || || || ||||| || ||| | || | | || |||| Sbjct 359149 GCATGGGAACGAGGCCATTGGAGGTCCCATTCGTGCCACATATCGAGGTGCCCTTGGCAC 359208 Query 76857 GAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTT 76916 | || | | | ||||| || || || ||| || || || | |||||| ||| Sbjct 359209 GGATGCAATGGACATTCAGGCCAATGCCGCCCGCCGACTTGGAAATCATGGCACAGTGTT 359268 Query 76917 TCAATGTGTCATAGATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAG 76976 || | | | || || || || ||| |||| | ||||| || ||| | Sbjct 359269 CCACCGACTTGAAAATACCTTCGATCGAATCGGATGTCATAGTCAGAAGGAAGCAGGACG 359328 Query 76977 ACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATT 77036 | | ||| | | ||| | || |||| || || || || || ||||| | Sbjct 359329 AGAGTTGCGGTCGGTTAGTGGCAGCGGCGAACAGAGTGGGTGAGGCGTGTGTGAAGAAGC 359388 Query 77037 TTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTA 77096 || || || | |||||| || |||| | | || || ||||| ||| ||||| | Sbjct 359389 GCTCTGACAGCAAATTGTAGGTCTCAACAGCGGCATCGATATCTTCACCATGGATTCCAA 359448 Query 77097 CAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACA 77156 || || ||||| | |||||| || || || || ||| |||| ||| | || | || Sbjct 359449 TCGCCACGCGCATTAGCATATGTTGCGGCCGCTCGACAATCTTGCCATTACTCTTAAGCA 359508 Query 77157 AGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAA 77216 | || || ||| | || ||||| |||||||| ||||| |||||| | ||||||| Sbjct 359509 AATACGAACGTTCGAGGGTCTTAAAGCCAAAATAATTGTACCCAAAGTCACGATCGTAAA 359568 Query 77217 TAAT 77220 | || Sbjct 359569 TTAT 359572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712922315761920