Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20serrata_20[refseq_20GCF_5F002093755.1_202017-04-14] 1,356 sequences; 198,035,861 total letters Query= NC_031059.1 Length=38773 Score E Sequences producing significant alignments: (Bits) Value seq690 95.1 3e-15 >seq690 Length=54228 Score = 95.1 bits (104), Expect = 3e-15 Identities = 449/695 (65%), Gaps = 35/695 (5%) Strand=Plus/Minus Query 5589 GGCGTTGCTGC-ATGCGATGGAGGCGGTGAACGCCGACTGCCACCGCTTCGATGTGTTCG 5647 |||| |||| | |||||||||| ||||||||||| || | ||| | || ||||||| Sbjct 7169 GGCGCTGCTTCCATGCGATGGAAGCGGTGAACGCGGATGGGCACAAATGGGACGTGTTCG 7110 Query 5648 TGCTGTGGCC----GGGGTCGGACCGGCCCGAGCGGCCGCAGATCGTG-GCCTATCAGGA 5702 || ||||| || ||| | ||| ||| ||| ||| ||| || | |||||| Sbjct 7109 TGAAATGGCCTGATGGCGTC--ATCGG-----GCGTCCGGTGAT-GTGCGCGTTTCAGGA 7058 Query 5703 CCTCTATTCGGGCAAGATCCTCAGCTGGCGGATCGACCATACGCCGAACGAGGTGGCCGT 5762 || | ||| || | |||||| |||||| | |||| | | ||| || ||| || Sbjct 7057 TCTGTTTTCAGGGATGATCCTGTCATGGCGGGTGGACCGTTCTGAAAACCGGGAGGCGGT 6998 Query 5763 GATGGCAGCCTTTGGCGAGATGGTCGAAACCTATGGCATCCCGAAGCACTGCACCTTCGA 5822 | || || ||||| |||||||| | |||||| || ||| |||| Sbjct 6997 GCGTCTGGCGTTCGGCGACATGGTCGAGGAGTTTGGCATTCCTTCTGTCTGTTATCTCGA 6938 Query 5823 CAACGGGCGGGAATTCGCGGCCAAGTGGCTGTCAGGCGGGGCCAAGACGCGCTATCGCGG 5882 ||||||||| | || || | ||||||||| | || || | | || | | Sbjct 6937 TAACGGGCGGAACTTTGCATCGAAGTGGCTGACTGGTGGTATTGAAAACCGGTTCAGGTT 6878 Query 5883 CAAGATCCGCGACGATGACCCGATGGGTGTTCTGCCGCTTTTGAACATCAAGATCCATTG 5942 |||| |||| ||||| || ||| | ||| ||||||| | | | || | | || || Sbjct 6877 CAAGGTCCGTGACGACGATCCGGTTGGTATTCTGCCACAGCTTGGCGTCGATGTTCACTG 6818 Query 5943 GGCGAAGCCGGCCCATGGGCAGGCCAAGCCCATCGAGCGGGCGTTCCGCGATTTTGC-CA 6001 | | | ||| | || ||| | ||||| |||||||| || || || ||| | || || Sbjct 6817 GACAACGCCTTACTCGGGCCAGTCGAAGCCGATCGAGCGCGCATTTCGGGATATGGCGCA 6758 Query 6002 GCGACATTTCGAAGGATATCCG--GTTCCAGGGGGCCTATACCGGCAACCGGCCGGATGC 6059 | || | | || | ||||| ||| ||| |||| || |||||| |||| || Sbjct 6757 G-AACGTCGCCAA--ACATCCGCACTTCGCGGGTGCCTGGACGGGCAACACGCCGATGGC 6701 Query 6060 CAAGCCGGAGGACTACGCGACGCGGGCCATCCCGCTGGA-CGATTTCGTGC-GCG-TGGT 6116 |||||||||| ||||||| | ||| | ||| | || || |||| || || | | Sbjct 6700 CAAGCCGGAGAACTACGCCAGCACGGCGGTGCCGATCGAGCGGTTTCTGGCAACGATCGC 6641 Query 6117 GGGCGAGCGCATCGCCGAACACAATGCGCGT----GTCGGGCGCCAGTCGGAAACCGCGG 6172 | |||| ||| | |||| || |||||| |||||||| | | ||| |||| Sbjct 6640 CGACGAG---ATCCGCAAACATAACGCGCGTGCAGGTCGGGCGAC-GGCGG--TGTGCGG 6587 Query 6173 CGG--GCCGCAGCTTCGATGAGACCTTCGCCGAGAGCTATGCCGCCTCGACGGTCGTGCG 6230 ||| | || ||| | || | ||||||| | |||||| | ||| || || | Sbjct 6586 CGGAAAACTGAGTTTCCAGCAGGCATTCGCCGCGTCCTATGCGGTCTCTCCGATCACTCA 6527 Query 6231 CGCGACGGAGGAGCAGCGGCGCCTCTGGCTGATGG 6265 |||||| ||||| || || ||||||||||||| Sbjct 6526 GGCGACGCCTGAGCAACGTCGTCTCTGGCTGATGG 6492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123950004062920