Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq2 176 5e-39
>seq2
Length=21544594
Score = 176 bits (194), Expect = 5e-39
Identities = 534/815 (66%), Gaps = 20/815 (2%)
Strand=Plus/Plus
Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753
|||||||||||||| || || || || || ||||| |||||||||| | ||| || ||
Sbjct 8575050 TTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAATGGGTTT 8575109
Query 16754 GTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811
| | || | || ||| | |||| || ||| || | |||||||| || |
Sbjct 8575110 TTGGTGTTGTAGATCTTTCCAACG--CCCAACTCCACGAGCAAACGGTCCGCTACGAACT 8575167
Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871
| || || ||| |||| | ||||||||||| || || | | || || || || || |
Sbjct 8575168 CAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTGACGGGCAGGGCATCGG 8575227
Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA-CTAGCAA---CTCGTTCC 16927
| | || ||||| || | ||||| || || || | | | |||| |
Sbjct 8575228 TGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCGATGATGCGCTCGCGCT 8575287
Query 16928 TCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCC 16987
| || || || | || || | |||||||| || || ||||| || || |||
Sbjct 8575288 TGGGTCGCTGCACC----AGGTGCTGGAACATCAGCACGGCAAAGTCGCAGTGCAAGCCC 8575343
Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047
||||| | ||| || ||||| || || ||||| || |||||| || || |||||
Sbjct 8575344 TCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCTTCTTA 8575403
Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCG 17107
| ||| || || | |||||| || ||||| || ||||| |||| ||||| |||
Sbjct 8575404 AGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGCAAAGGCG 8575463
Query 17108 ATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACGA-ATCCATTTCTGCACCCACTCGG 17165
|| | || || || | | || | ||| | |||| ||||| | | |||| || |
Sbjct 8575464 ATGATGCGCTCCCCGAAATTAGCCGACTTGG--ACGAGATCCAGGACAGGGCCCAGTCTG 8575521
Query 17166 CTTTTTGCTTTATGCAATC--CATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTG 17223
| || |||| | || | ||||||||| || || || || | | |||| | ||
Sbjct 8575522 CCTTGCGCTTCA--CAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCTCGCTGGTG 8575579
Query 17224 TAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCAT 17283
| | || || || || ||||| | | |||||||| || ||||| | |||||||||
Sbjct 8575580 TGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTCCAT 8575639
Query 17284 GGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCG 17343
||| ||||| || ||||| |||||||| || |||| || || || ||| ||||||
Sbjct 8575640 GGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTGAATCG 8575699
Query 17344 TTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTT 17403
||| | || || ||||| |||||||| || ||||| || || |||| | |||
Sbjct 8575700 CTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCAAAGAAGGCCAGCACGTGCGA 8575759
Query 17404 AATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATC 17463
||||||| ||||| | || | ||||||| | | || ||||| | |||
Sbjct 8575760 GATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAGGTCCTTGGACAAATC 8575819
Query 17464 CACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCT 17498
||| || ||| |||||| ||| |||| | ||||
Sbjct 8575820 CACCTCCTCGACGGTCCAGAAAGAAGCCTCAGCCT 8575854
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517496310250920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |