Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq2 176 5e-39 >seq2 Length=21544594 Score = 176 bits (194), Expect = 5e-39 Identities = 534/815 (66%), Gaps = 20/815 (2%) Strand=Plus/Plus Query 16694 TTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTA 16753 |||||||||||||| || || || || || ||||| |||||||||| | ||| || || Sbjct 8575050 TTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAATGGGTTT 8575109 Query 16754 GTAGC--TGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATT 16811 | | || | || ||| | |||| || ||| || | |||||||| || | Sbjct 8575110 TTGGTGTTGTAGATCTTTCCAACG--CCCAACTCCACGAGCAAACGGTCCGCTACGAACT 8575167 Query 16812 CTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCG 16871 | || || ||| |||| | ||||||||||| || || | | || || || || || | Sbjct 8575168 CAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTGACGGGCAGGGCATCGG 8575227 Query 16872 TCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA-CTAGCAA---CTCGTTCC 16927 | | || ||||| || | ||||| || || || | | | |||| | Sbjct 8575228 TGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCGATGATGCGCTCGCGCT 8575287 Query 16928 TCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCC 16987 | || || || | || || | |||||||| || || ||||| || || ||| Sbjct 8575288 TGGGTCGCTGCACC----AGGTGCTGGAACATCAGCACGGCAAAGTCGCAGTGCAAGCCC 8575343 Query 16988 TCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTT 17047 ||||| | ||| || ||||| || || ||||| || |||||| || || ||||| Sbjct 8575344 TCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCTTCTTA 8575403 Query 17048 AACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCG 17107 | ||| || || | |||||| || ||||| || ||||| |||| ||||| ||| Sbjct 8575404 AGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCCACGGCGGCAAAGGCG 8575463 Query 17108 ATTAATCGTTCGGCGTACGTCGC-GTCTTTGTTACGA-ATCCATTTCTGCACCCACTCGG 17165 || | || || || | | || | ||| | |||| ||||| | | |||| || | Sbjct 8575464 ATGATGCGCTCCCCGAAATTAGCCGACTTGG--ACGAGATCCAGGACAGGGCCCAGTCTG 8575521 Query 17166 CTTTTTGCTTTATGCAATC--CATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTG 17223 | || |||| | || | ||||||||| || || || || | | |||| | || Sbjct 8575522 CCTTGCGCTTCA--CAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCTCGCTGGTG 8575579 Query 17224 TAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCAT 17283 | | || || || || ||||| | | |||||||| || ||||| | ||||||||| Sbjct 8575580 TGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTCCAT 8575639 Query 17284 GGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCG 17343 ||| ||||| || ||||| |||||||| || |||| || || || ||| |||||| Sbjct 8575640 GGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTGAATCG 8575699 Query 17344 TTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTT 17403 ||| | || || ||||| |||||||| || ||||| || || |||| | ||| Sbjct 8575700 CTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCAAAGAAGGCCAGCACGTGCGA 8575759 Query 17404 AATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATC 17463 ||||||| ||||| | || | ||||||| | | || ||||| | ||| Sbjct 8575760 GATGAAATGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCAGTAAGGTCCTTGGACAAATC 8575819 Query 17464 CACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCT 17498 ||| || ||| |||||| ||| |||| | |||| Sbjct 8575820 CACCTCCTCGACGGTCCAGAAAGAAGCCTCAGCCT 8575854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517496310250920