Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq2 149 6e-31 >seq2 Length=21544594 Score = 149 bits (164), Expect = 6e-31 Identities = 480/730 (66%), Gaps = 24/730 (3%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 |||||||| ||||| || ||||| || | ||||| | ||||| || | ||| || || Sbjct 8575050 TTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAATGGGTTT 8575109 Query 15992 GTAGC--TGAAAATATCTTAGAGTAC-CCCAGTTCCGTAACTAATCTATCTGCTACAAAT 16048 | | || | || | || | || |||| ||| | || | || ||||| || Sbjct 8575110 TTGGTGTTGTAGATCT-TTCCA--ACGCCCAACTCCACGAGCAAACGGTCCGCTACGAAC 8575166 Query 16049 TCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCGTACCGGAAGAGCTTT 16107 || || || || |||| | |||||| || || || || || | | || || || || | Sbjct 8575167 TCAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTG-ACGGGCAGGGCATC 8575225 Query 16108 TGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTG----GCTCGTG 16163 || | || | || || || | ||||| || ||||| ||| || ||||| | Sbjct 8575226 GGTGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCGATGATGCGCTCGCG 8575285 Query 16164 TTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACG-CGAAGTCGCAATGTAGT 16222 || | || || | ||||| | ||||| || |||| | |||||||| || | Sbjct 8575286 CTTGGGTCGCTGCACC----AGGTGCTGGAACATCAG-CACGGCAAAGTCGCAGTGCAAG 8575340 Query 16223 CCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTC 16282 || ||||| | ||| || |||||||| || || || || ||||| || || ||| Sbjct 8575341 CCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCTTC 8575400 Query 16283 TTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCTCAACAGATGCAA 16340 || | |||||| || | || || || | | ||| ||| || ||||| || | |||| Sbjct 8575401 TTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA--GAAGATGCCCTCCACGGCGGCAA 8575458 Query 16341 AAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCATTTCTGTACCCAT 16399 | ||||| | || ||| || | |||| || |||| ||||| | | |||| Sbjct 8575459 AGGCGATGATGCGCTCCCCGAAATTAGCCGACTTGG-ACGAGATCCAGGACAGGGCCCAG 8575517 Query 16400 TCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCC 16459 || || || | || | | ||||||||| || || || |||| | |||| | Sbjct 8575518 TCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCTCGCTGG 8575577 Query 16460 TGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCT 16519 || ||| || || || || |||| | ||||||||| || ||||| | |||||| Sbjct 8575578 TGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTCC 8575637 Query 16520 ATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAAT 16579 ||||| ||||| || || ||||||||||| ||||||| || || || ||| ||| Sbjct 8575638 ATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTGAAT 8575697 Query 16580 CGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGC 16639 || ||| |||||||||| || ||||| || ||| || ||||| || |||| | |||| Sbjct 8575698 CGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCAAAGAAGGCCAGCACGTGC 8575757 Query 16640 TTAATGAAAT 16649 ||||||| Sbjct 8575758 GAGATGAAAT 8575767 Score = 87.8 bits (96), Expect = 2e-12 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 119011 CATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTTATCGTTTAAGTAGAT 119069 || || || || |||||||| || ||| || | ||| |||||| ||||| | ||| Sbjct 4549694 CAGCCGACATAGCCGTTGGGGTCGCGTCCATCCAGACT-GTACTTGTCGTTCAGCAGGAT 4549636 Query 119070 ACAG-ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGT 119128 | || | ||||| |||||| ||| | |||||||||| || ||||| ||||||| Sbjct 4549635 CGCGTACTCC-AACGCCTGTTCCGGTGTCGCAGTCCATTCCAGAATCTTTTTGGCCCAGT 4549577 Query 119129 ACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCC 119188 |||| || ||| | ||||||||||| |||||| | | ||| ||||| || | ||||| Sbjct 4549576 ACATGCGCAAAAAGCCGTGCATTTTTCCCTCGCGCACGAGCTGCAGTTGCGCCGAGTTCC 4549517 Query 119189 ATAG 119192 | || Sbjct 4549516 ACAG 4549513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511365694171080