Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq2 149 6e-31
>seq2
Length=21544594
Score = 149 bits (164), Expect = 6e-31
Identities = 480/730 (66%), Gaps = 24/730 (3%)
Strand=Plus/Plus
Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991
|||||||| ||||| || ||||| || | ||||| | ||||| || | ||| || ||
Sbjct 8575050 TTTTCGAAAAAGTTGGTCTTTCCATCCAGCGATATCATCTCCATGAAGTTAAATGGGTTT 8575109
Query 15992 GTAGC--TGAAAATATCTTAGAGTAC-CCCAGTTCCGTAACTAATCTATCTGCTACAAAT 16048
| | || | || | || | || |||| ||| | || | || ||||| ||
Sbjct 8575110 TTGGTGTTGTAGATCT-TTCCA--ACGCCCAACTCCACGAGCAAACGGTCCGCTACGAAC 8575166
Query 16049 TCTATATATTGACACATTAAGTCGCAATTAATTCCTAT-AAGTCGTACCGGAAGAGCTTT 16107
|| || || || |||| | |||||| || || || || || | | || || || || |
Sbjct 8575167 TCAATGTACTGGGACATCAGGTCGCAGTTCATGCCGATCAAATTG-ACGGGCAGGGCATC 8575225
Query 16108 TGTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTG----GCTCGTG 16163
|| | || | || || || | ||||| || ||||| ||| || ||||| |
Sbjct 8575226 GGTGAGGAACTCCTGCTCAATGGCCACCGCGTCGCGGATGATCTCGATGATGCGCTCGCG 8575285
Query 16164 TTTCAGACGGTGTATGGTTTAGGTGTTTAAACATTAGACACG-CGAAGTCGCAATGTAGT 16222
|| | || || | ||||| | ||||| || |||| | |||||||| || |
Sbjct 8575286 CTTGGGTCGCTGCACC----AGGTGCTGGAACATCAG-CACGGCAAAGTCGCAGTGCAAG 8575340
Query 16223 CCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTC 16282
|| ||||| | ||| || |||||||| || || || || ||||| || || |||
Sbjct 8575341 CCCTCGTCGCGAGAGATCAGCTCGTTGGAGAAGGTCAATCCAGGCATCAGACCGCGCTTC 8575400
Query 16283 TTTAACCAGAATATCGCAGCAAA--TGACCCCGAAAAGAATATACCCTCAACAGATGCAA 16340
|| | |||||| || | || || || | | ||| ||| || ||||| || | ||||
Sbjct 8575401 TTAAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA--GAAGATGCCCTCCACGGCGGCAA 8575458
Query 16341 AAGCGATTAATCGTTCCGCGTACGTAGCATCTTTATTACGA-ATCCATTTCTGTACCCAT 16399
| ||||| | || ||| || | |||| || |||| ||||| | | ||||
Sbjct 8575459 AGGCGATGATGCGCTCCCCGAAATTAGCCGACTTGG-ACGAGATCCAGGACAGGGCCCAG 8575517
Query 16400 TCGGCTTTTTGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCC 16459
|| || || | || | | ||||||||| || || || |||| | |||| |
Sbjct 8575518 TCTGCCTTGCGCTTCACAGCCGGCATCGTTTCGATAGCGTTGAACAGGTACTCTCGCTGG 8575577
Query 16460 TGAATATCGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCT 16519
|| ||| || || || || |||| | ||||||||| || ||||| | ||||||
Sbjct 8575578 TGTGGATCCCGGATGTAAGTGTCGATCAAAACACTGTACATCTCCGAGTGCACGTTCTCC 8575637
Query 16520 ATGGCTATCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAAT 16579
||||| ||||| || || ||||||||||| ||||||| || || || ||| |||
Sbjct 8575638 ATGGCGATCTGGAAGCCGTAGAAGCATCGTGCCTCCGTGATCTGCACCTCCTGACTGAAT 8575697
Query 16580 CGTTCCGCCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGC 16639
|| ||| |||||||||| || ||||| || ||| || ||||| || |||| | ||||
Sbjct 8575698 CGCTCCACCAGGTTCTCGTTTACGATGCCATCAGAGGCGGCAAAGAAGGCCAGCACGTGC 8575757
Query 16640 TTAATGAAAT 16649
|||||||
Sbjct 8575758 GAGATGAAAT 8575767
Score = 87.8 bits (96), Expect = 2e-12
Identities = 133/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 119011 CATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTTATCGTTTAAGTAGAT 119069
|| || || || |||||||| || ||| || | ||| |||||| ||||| | |||
Sbjct 4549694 CAGCCGACATAGCCGTTGGGGTCGCGTCCATCCAGACT-GTACTTGTCGTTCAGCAGGAT 4549636
Query 119070 ACAG-ACGCTTAACGCACTTTCCGGAGTCTTACTCCATTCCAGTAtttttttAGCCCAGT 119128
| || | ||||| |||||| ||| | |||||||||| || ||||| |||||||
Sbjct 4549635 CGCGTACTCC-AACGCCTGTTCCGGTGTCGCAGTCCATTCCAGAATCTTTTTGGCCCAGT 4549577
Query 119129 ACATACGTAAATACCCGTGCATTTTACCCTCGTTAATCATCTGAAGTTGTGCGGTGTTCC 119188
|||| || ||| | ||||||||||| |||||| | | ||| ||||| || | |||||
Sbjct 4549576 ACATGCGCAAAAAGCCGTGCATTTTTCCCTCGCGCACGAGCTGCAGTTGCGCCGAGTTCC 4549517
Query 119189 ATAG 119192
| ||
Sbjct 4549516 ACAG 4549513
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511365694171080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |