Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 >seq1 Length=23539531 Score = 109 bits (120), Expect = 4e-19 Identities = 273/411 (66%), Gaps = 8/411 (2%) Strand=Plus/Minus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || || || ||||| | ||||||||||||||||| ||||| || ||| | || | Sbjct 2846494 GGCGATCTGGGCCCGGTGTACGGCTTCCAGTGGAGGCATTTCGGGGCGCAGTACGGCACC 2846435 Query 18849 TGTCAATCAAACTATTTACAGCAAGG-AATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 || | |||| | |||||| |||||| ||||||| || || || || || Sbjct 2846434 TGCGACGATGACTACAG-CGGCAAGGGAATCGACCAGCTGCGCCAGGTGATCGACACCAT 2846376 Query 18908 TAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCC 18967 | | ||||| | |||||| || || || ||| |||||||||| ||| ||||| Sbjct 2846375 CAGGAATAACCCCTCAGACCGACGCATCATCATGTCGGCTTGGAATCCGCTGGACATCCC 2846316 Query 18968 CTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGT-TGCAA-----ACGG 19021 |||| || || || || ||| || ||||||||||| | | | ||| Sbjct 2846315 AAAGATGGCCCTGCCGCCGTGCCACTGCTTGGCGCAGTTTTACGTCTCCGAGAAGCGCGG 2846256 Query 19022 TGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAA 19081 ||| | || ||||| | ||||||||| | || |||||||| || ||||| ||||| Sbjct 2846255 TGAGCTGTCGTGCCAGCTCTACCAGAGAAGCGCCGACATGGGCCTGGGCGTACCCTTCAA 2846196 Query 19082 CATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGG 19141 ||| || || || || || ||| |||| | || ||||| || || || || | || Sbjct 2846195 CATCGCCTCCTACGCCCTGCTCACCCACATGATTGCCCATGTGACGGGTCTGAAGCCGGG 2846136 Query 19142 AGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGA 19192 || || |||| || ||||| ||| |||| | ||| | || || |||| Sbjct 2846135 CGACTTTGTTCACACCATGGGCGATACACACGTCTACCTCAACCACGTAGA 2846085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399466903431855