Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1 298 7e-76 >seq1 Length=23539531 Score = 298 bits (330), Expect = 7e-76 Identities = 1202/1876 (64%), Gaps = 38/1876 (2%) Strand=Plus/Plus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 ||||| || ||||| ||||||| | | || || || || || |||||||||||||| Sbjct 10003396 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10003455 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 ||||| ||||| |||| |||||| || || || || || ||| | || Sbjct 10003456 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 10003515 Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977 || || | ||| || || | || ||||| ||||| ||||| || || | || || || Sbjct 10003516 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10003575 Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 53034 |||||| || | | ||| || |||||||| | || || || | ||||| Sbjct 10003576 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGC----- 10003630 Query 53035 ATCTTCTGG---AAGGTTTGTAT--TCTGAATAGATCCACCATCTACCATA--ATCCTAT 53087 | ||||||| | ||| | || | ||||| ||||| || || | ||| ||| | Sbjct 10003631 ACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCC-CCTGCT-CGATATGATCTGGT 10003688 Query 53088 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 53147 |||| || || || | ||| || | ||||||| | | | | ||| | || | Sbjct 10003689 TCTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGA 10003748 Query 53148 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 53207 | || || ||||| || |||| |||| ||| ||||| || || |||| ||||| || | Sbjct 10003749 CCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGA 10003808 Query 53208 CAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 53267 || ||||| || |||| || ||||| || |||||||| ||||| || || || | | Sbjct 10003809 AGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCA 10003868 Query 53268 AACTATTTCTAAGACCGTATGTTCTGATTTTA-TCTTTTAGAGGTTCCCAATTCCAAAGA 53326 || | | ||||| |||| | | | || || | | ||| | ||| || Sbjct 10003869 GTGAGTTCCGGACACCGTGC-TTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGG 10003927 Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCC 53385 | || || || || | ||| || || || | | | || Sbjct 10003928 TTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCC 10003987 Query 53386 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACC 53445 | | || || |||||||| ||||| ||| || ||||| || || || || || || || Sbjct 10003988 T-CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCC 10004046 Query 53446 GTAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATG 53504 || ||||| ||||| || |||| || ||| | || | ||||| ||| || | | Sbjct 10004047 ATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCG-GCTTCTTCGCTTTCGTACG 10004105 Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564 | || | |||||| || || || || ||||| |||| |||||| || | || | || Sbjct 10004106 GGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGAT 10004165 Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624 | ||| ||| || | || ||||| | ||||||||||| ||||| || || || | Sbjct 10004166 GCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGT 10004225 Query 53625 TGAGGTTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTG 53679 | || ||| || || || ||||| || ||||| || || |||||| | || Sbjct 10004226 TTAGATTTTTGGTAACTATCTTTGTG-ACTTCCTTGAGCTTCTTGAAATCATACGTCTTC 10004284 Query 53680 TCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATT 53739 ||| | | || |||||||| | || || || |||| || || || || | ||||| Sbjct 10004285 TCCGGCG-TGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATC 10004343 Query 53740 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 53799 | | ||||| | || || ||||| | || || ||||| ||||| |||| ||| Sbjct 10004344 CGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATT 10004403 Query 53800 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTC 53859 || || || ||||| |||| || || ||||| | || ||| | || | || || || Sbjct 10004404 CTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTC 10004463 Query 53860 AATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT 53919 | || | || || || || ||| | | ||||||| | | ||| | Sbjct 10004464 CACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG--CC 10004521 Query 53920 CTTTTCTCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCC 53977 | ||||| |||||| |||| ||| || || || ||||| || | || Sbjct 10004522 CGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGG 10004581 Query 53978 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 54037 | || ||||| | | || ||||| | |||||| || |||| ||| ||| |||||| Sbjct 10004582 AGACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTC 10004641 Query 54038 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 54097 || |||||||| || ||||| || || ||| ||||| | | | || || || || Sbjct 10004642 ATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTG 10004701 Query 54098 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157 || || ||||| || || || |||||| | | | ||| || ||||| ||||||| || Sbjct 10004702 CCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAA 10004761 Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217 |||| | | || || || ||| ||||||||||| | || | ||| |||||| Sbjct 10004762 ATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTA 10004821 Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 54277 | || |||| ||| |||| | |||||||| | |||||| || ||| | || || | Sbjct 10004822 AAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTG 10004881 Query 54278 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335 || | |||||||| | | | ||| || || || || || || || ||||| | Sbjct 10004882 CCCTTTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCA 10004939 Query 54336 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 54395 |||||| ||| | | | | |||||||| || || || ||||| | || | Sbjct 10004940 TGGCGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAA 10004999 Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455 | ||||| |||| || | || | || | || ||| | || || || || | Sbjct 10005000 GGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCAT 10005059 Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515 | || || | || || || ||||| || || || | |||| || |||||| | Sbjct 10005060 GTGTGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCCTCTC 10005119 Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575 ||| ||||| | || || ||||| | ||| ||||| |||| || ||||||| || Sbjct 10005120 CATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGT 10005179 Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635 || | || |||| ||||| |||| || || || ||||||||||| || ||||| Sbjct 10005180 TTCTCTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAAGT 10005239 Query 54636 CTCGTTCGTAAATAAT 54651 | || || || || || Sbjct 10005240 CACGATCATAGATTAT 10005255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593665055439120