Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1 298 7e-76
>seq1
Length=23539531
Score = 298 bits (330), Expect = 7e-76
Identities = 1202/1876 (64%), Gaps = 38/1876 (2%)
Strand=Plus/Plus
Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857
||||| || ||||| ||||||| | | || || || || || ||||||||||||||
Sbjct 10003396 CTTGTTCACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCC 10003455
Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917
||||| ||||| |||| |||||| || || || || || ||| | ||
Sbjct 10003456 GGTTTTAAGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGG 10003515
Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977
|| || | ||| || || | || ||||| ||||| ||||| || || | || || ||
Sbjct 10003516 CTCGGCCACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGC 10003575
Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 53034
|||||| || | | ||| || |||||||| | || || || | |||||
Sbjct 10003576 CATTTTAATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGATCTCGC----- 10003630
Query 53035 ATCTTCTGG---AAGGTTTGTAT--TCTGAATAGATCCACCATCTACCATA--ATCCTAT 53087
| ||||||| | ||| | || | ||||| ||||| || || | ||| ||| |
Sbjct 10003631 ACCTTCTGGGGTATGGTCTCAATGTTTTGAATCGATCC-CCTGCT-CGATATGATCTGGT 10003688
Query 53088 TCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAA 53147
|||| || || || | ||| || | ||||||| | | | | ||| | || |
Sbjct 10003689 TCTTCATGTCGTCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGA 10003748
Query 53148 CTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCA 53207
| || || ||||| || |||| |||| ||| ||||| || || |||| ||||| || |
Sbjct 10003749 CCACCTGGAATTCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGA 10003808
Query 53208 CAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATA 53267
|| ||||| || |||| || ||||| || |||||||| ||||| || || || | |
Sbjct 10003809 AGGATTCATTGTTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCA 10003868
Query 53268 AACTATTTCTAAGACCGTATGTTCTGATTTTA-TCTTTTAGAGGTTCCCAATTCCAAAGA 53326
|| | | ||||| |||| | | | || || | | ||| | ||| ||
Sbjct 10003869 GTGAGTTCCGGACACCGTGC-TTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGG 10003927
Query 53327 TCCGACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCC 53385
| || || || || | ||| || || || | | | ||
Sbjct 10003928 TTCGTTGGCACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCTGCCC 10003987
Query 53386 TACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACC 53445
| | || || |||||||| ||||| ||| || ||||| || || || || || || ||
Sbjct 10003988 T-CGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGCGCC 10004046
Query 53446 GTAATAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATG 53504
|| ||||| ||||| || |||| || ||| | || | ||||| ||| || | |
Sbjct 10004047 ATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCG-GCTTCTTCGCTTTCGTACG 10004105
Query 53505 GATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 53564
| || | |||||| || || || || ||||| |||| |||||| || | || | ||
Sbjct 10004106 GGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACGAT 10004165
Query 53565 GTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTAT 53624
| ||| ||| || | || ||||| | ||||||||||| ||||| || || || |
Sbjct 10004166 GCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTTGT 10004225
Query 53625 TGAGGTTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAA----TTG 53679
| || ||| || || || ||||| || ||||| || || |||||| | ||
Sbjct 10004226 TTAGATTTTTGGTAACTATCTTTGTG-ACTTCCTTGAGCTTCTTGAAATCATACGTCTTC 10004284
Query 53680 TCCATCTATTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATT 53739
||| | | || |||||||| | || || || |||| || || || || | |||||
Sbjct 10004285 TCCGGCG-TGACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTCATC 10004343
Query 53740 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 53799
| | ||||| | || || ||||| | || || ||||| ||||| |||| |||
Sbjct 10004344 CGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTACATT 10004403
Query 53800 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTC 53859
|| || || ||||| |||| || || ||||| | || ||| | || | || || ||
Sbjct 10004404 CTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGGATTTCCGGTCTC 10004463
Query 53860 AATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT 53919
| || | || || || || ||| | | ||||||| | | ||| |
Sbjct 10004464 CACTTGCGCCTCAATGATGGCAAACCACAGGGATTGAGCCTTAACCGTTCGGTTGG--CC 10004521
Query 53920 CTTTTCTCTT--TCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCC 53977
| ||||| |||||| |||| ||| || || || ||||| || | ||
Sbjct 10004522 CGACCCTCTTGCTCGTATTTCTCGTACAGCTTTTCGAATTCATCGCCCCACACTTCGTGG 10004581
Query 53978 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 54037
| || ||||| | | || ||||| | |||||| || |||| ||| ||| ||||||
Sbjct 10004582 AGACCTGGACACTTGTGGGGGCACATGAGCGACCAATCACCGTTGGCCTCCACGCGTTTC 10004641
Query 54038 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 54097
|| |||||||| || ||||| || || ||| ||||| | | | || || || ||
Sbjct 10004642 ATGAAGAGATCGGGTATCCACAGGGCGTAAAACAGATCGCGTGCGCGATTCTCTTCTTTG 10004701
Query 54098 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157
|| || ||||| || || || |||||| | | | ||| || ||||| ||||||| ||
Sbjct 10004702 CCCGTGTTCTTCTTCAGTTCCAGGAACTCAAAGACATCCGAGTGCCAGGGTTCCAGATAA 10004761
Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217
|||| | | || || || ||| ||||||||||| | || | ||| ||||||
Sbjct 10004762 ATGGCAAAGGCACCGGGGCGCTTGCCGCCTCCCTGATCCACATAACGAGCCACATTATTA 10004821
Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 54277
| || |||| ||| |||| | |||||||| | |||||| || ||| | || || |
Sbjct 10004822 AAGACCCTCAGCATGGGAACCAACCCATTGGAAGTACCATTTGTGCCGCAAATCGAGGTG 10004881
Query 54278 CCACTGGCACGAAT--ATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTA 54335
|| | |||||||| | | | ||| || || || || || || || ||||| |
Sbjct 10004882 CCCTTTGCACGAATGCAATGCACGTTG--AGTCCGATGCCACCGGCGGACTTGGAGATCA 10004939
Query 54336 ATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTA 54395
|||||| ||| | | | | |||||||| || || || ||||| | || |
Sbjct 10004940 TGGCGCATTGTTCCACAGACTTGAAAATGCCCTCGATGGAGTCGGCCGTCATGGTCAGAA 10004999
Query 54396 GAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGT 54455
| ||||| |||| || | || | || | || ||| | || || || || |
Sbjct 10005000 GGAAACACGACGACAACTGCGGCCGGTTTGTGGCAGCGGCAAACAGTGTGGGCGATGCAT 10005059
Query 54456 GCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATT 54515
| || || | || || || ||||| || || || | |||| || |||||| |
Sbjct 10005060 GTGTGAAGTAGCGCTCCGACAGAAGATTATAGGTTTCCACGGCTGCATCGATATCCTCTC 10005119
Query 54516 GATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGT 54575
||| ||||| | || || ||||| | ||| ||||| |||| || ||||||| ||
Sbjct 10005120 CATGGATTCCGATCGCCACGCGCATCAGCATATGCTGCGGTCGCTCTGCGATCTTTCCGT 10005179
Query 54576 TTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 54635
|| | || |||| ||||| |||| || || || ||||||||||| || |||||
Sbjct 10005180 TTCTCTTGAGCAGATAGGAACGCTCCAGGGTCTTGAAGCCAAAATAGTTATACCCAAAGT 10005239
Query 54636 CTCGTTCGTAAATAAT 54651
| || || || || ||
Sbjct 10005240 CACGATCATAGATTAT 10005255
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 593665055439120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |