Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq1 255 7e-63
>seq1
Length=23539531
Score = 255 bits (282), Expect = 7e-63
Identities = 550/815 (67%), Gaps = 28/815 (3%)
Strand=Plus/Plus
Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596
|| || ||||||||||| ||| | || || | |||| | | | | ||||||||
Sbjct 2845932 TACACGGCCATCTCCATTTTGATCTTTGGATGTGGATTGTAGTCGACTATCTCAAAGTCC 2845991
Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACC---CGCCTCAGGATCCTGAGCCTGGGAAAG 145653
|| | |||||| || ||||||| |||| || | | |||| ||| ||||||||
Sbjct 2845992 TCGAAGCGGAAGTCCTCGATGTCCTGCACCTGACGTTTAATGATC---AGCTTGGGAAAG 2846048
Query 145654 GGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGC 145713
|| || || | | ||| || |||||| ||||| ||||||||||||||||||||
Sbjct 2846049 GGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGTTGAGGTAGACGTGT 2846108
Query 145714 GCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATG 145773
| || |||| | ||| | ||||| || |||| || ||||| | ||||| | ||||
Sbjct 2846109 GTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCAATCATG 2846168
Query 145774 TAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAG 145833
| ||| ||||||| |||| ||| ||||||||||| || ||||| |||||||| |
Sbjct 2846169 TGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGTACGCCCAGGCCCATGTCGGCGCTT 2846228
Query 145834 CGCTGGTACAGCTGGCAGGAGAGCTCCCCGC------CCGCCACGTAGAACTGGCACAGG 145887
| |||||| |||||||| || ||||| |||| | | ||||| ||||| || |
Sbjct 2846229 CTCTGGTAGAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACGTAAAACTGCGCCAAG 2846288
Query 145888 AGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACG 145947
|||||| |||||||||||||| || | |||| ||| ||||| || | | || |
Sbjct 2846289 CAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCCAAGCCGACATGATG 2846348
Query 145948 A-GCCTCCTGCTCT-CGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCA 146005
| || || | ||| |||||| || |||| | |||| | | |||||||| |
Sbjct 2846349 ATGCGTC--GGTCTGAGGGGTTATTCCTGATGGTGTCGATCACCTGGCGCAGCTGGTCGA 2846406
Query 146006 CGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACT 146065
|||| || | ||| || | | || ||||| |||||||| ||||||||||
Sbjct 2846407 TTCCCTTGCCGCTGTAGTCATCGTCGCAGGTGCCGTACTGCGCCCCGAAATGCCTCCACT 2846466
Query 146066 GGAACCCGTAGACGGGCCCCAGGTCCCC--GGGCTC--CCTGTG--CCCCAGCCCGGCCC 146119
|||| ||||| || || ||||| || || ||||| || ||| ||||| | | ||
Sbjct 2846467 GGAAGCCGTACACCGGGCCCAGATCGCCAACGGCTCGGCCCGTGAACCCCATCTTGTCC- 2846525
Query 146120 GGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCT 146179
||||| || | ||| | ||| | |||||||| | || | |||| |||
Sbjct 2846526 -----AGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCCTGCAGCA 2846580
Query 146180 CATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGA 146239
|||| ||||| ||| | |||||| |||||||| ||| ||| | | |||
Sbjct 2846581 GCTTGGCATCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACCGCGCGGAAGA 2846640
Query 146240 AGACCCTCTTGGTGGTCAGCAGGGGGAACTGGCCCCGCAGGGAGTACTTGGCCTGGTCCC 146299
|||| | ||| |||||||||||||| || | ||||| | | | ||| |
Sbjct 2846641 AGACACGCTTCGTGGTCAGCAGGGGAAAGGAGTTCCGCATGTCGAAGCGCATCTGACTGC 2846700
Query 146300 CGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCC 146334
|||| |||||||| |||||||| |||| | ||||
Sbjct 2846701 CGAACACGGACAGAGTGCCCACCTCCGTGCGGTCC 2846735
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 590020602560760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |