Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq1 255 7e-63 >seq1 Length=23539531 Score = 255 bits (282), Expect = 7e-63 Identities = 550/815 (67%), Gaps = 28/815 (3%) Strand=Plus/Plus Query 145537 TAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTCC 145596 || || ||||||||||| ||| | || || | |||| | | | | |||||||| Sbjct 2845932 TACACGGCCATCTCCATTTTGATCTTTGGATGTGGATTGTAGTCGACTATCTCAAAGTCC 2845991 Query 145597 TCCGCCCTGAAGTCATCTATGTCCTCCACC---CGCCTCAGGATCCTGAGCCTGGGAAAG 145653 || | |||||| || ||||||| |||| || | | |||| ||| |||||||| Sbjct 2845992 TCGAAGCGGAAGTCCTCGATGTCCTGCACCTGACGTTTAATGATC---AGCTTGGGAAAG 2846048 Query 145654 GGCCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGC 145713 || || || | | ||| || |||||| ||||| |||||||||||||||||||| Sbjct 2846049 GGTCGCGGTGTGCGCTCCAGTTGCTCCTTCAGCGGCTCTACGTGGTTGAGGTAGACGTGT 2846108 Query 145714 GCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATG 145773 | || |||| | ||| | ||||| || |||| || ||||| | ||||| | |||| Sbjct 2846109 GTATCGCCCATGGTGTGAACAAAGTCGCCCGGCTTCAGACCCGTCACATGGGCAATCATG 2846168 Query 145774 TAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAG 145833 | ||| ||||||| |||| ||| ||||||||||| || ||||| |||||||| | Sbjct 2846169 TGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGTACGCCCAGGCCCATGTCGGCGCTT 2846228 Query 145834 CGCTGGTACAGCTGGCAGGAGAGCTCCCCGC------CCGCCACGTAGAACTGGCACAGG 145887 | |||||| |||||||| || ||||| |||| | | ||||| ||||| || | Sbjct 2846229 CTCTGGTAGAGCTGGCACGACAGCTCACCGCGCTTCTCGGAGACGTAAAACTGCGCCAAG 2846288 Query 145888 AGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACG 145947 |||||| |||||||||||||| || | |||| ||| ||||| || | | || | Sbjct 2846289 CAGTGGCACGGCGGCAGGGCCATCTTTGGGATGTCCAGCGGATTCCAAGCCGACATGATG 2846348 Query 145948 A-GCCTCCTGCTCT-CGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCA 146005 | || || | ||| |||||| || |||| | |||| | | |||||||| | Sbjct 2846349 ATGCGTC--GGTCTGAGGGGTTATTCCTGATGGTGTCGATCACCTGGCGCAGCTGGTCGA 2846406 Query 146006 CGCCCTGCCCCCGGTAATCTGTCTTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACT 146065 |||| || | ||| || | | || ||||| |||||||| |||||||||| Sbjct 2846407 TTCCCTTGCCGCTGTAGTCATCGTCGCAGGTGCCGTACTGCGCCCCGAAATGCCTCCACT 2846466 Query 146066 GGAACCCGTAGACGGGCCCCAGGTCCCC--GGGCTC--CCTGTG--CCCCAGCCCGGCCC 146119 |||| ||||| || || ||||| || || ||||| || ||| ||||| | | || Sbjct 2846467 GGAAGCCGTACACCGGGCCCAGATCGCCAACGGCTCGGCCCGTGAACCCCATCTTGTCC- 2846525 Query 146120 GGGCGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCT 146179 ||||| || | ||| | ||| | |||||||| | || | |||| ||| Sbjct 2846526 -----AGGAATTCTCTGGAGCTGTTCCCATCCCAGATGTGCACATTCTTCGCCTGCAGCA 2846580 Query 146180 CATTGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGA 146239 |||| ||||| ||| | |||||| |||||||| ||| ||| | | ||| Sbjct 2846581 GCTTGGCATCCGTCTTGCCCGCCACGAACCACAGCAGCTCCTCGGCCACCGCGCGGAAGA 2846640 Query 146240 AGACCCTCTTGGTGGTCAGCAGGGGGAACTGGCCCCGCAGGGAGTACTTGGCCTGGTCCC 146299 |||| | ||| |||||||||||||| || | ||||| | | | ||| | Sbjct 2846641 AGACACGCTTCGTGGTCAGCAGGGGAAAGGAGTTCCGCATGTCGAAGCGCATCTGACTGC 2846700 Query 146300 CGAAGACGGACAGGGTGCCCACGCCCGTCCTGTCC 146334 |||| |||||||| |||||||| |||| | |||| Sbjct 2846701 CGAACACGGACAGAGTGCCCACCTCCGTGCGGTCC 2846735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590020602560760