Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq4 116 3e-21 seq1 116 3e-21 seq9 93.3 4e-14 >seq4 Length=24153973 Score = 116 bits (128), Expect = 3e-21 Identities = 230/336 (68%), Gaps = 11/336 (3%) Strand=Plus/Plus Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676 ||||| | ||||||||| | ||| | |||| |||||||| | |||||| ||| ||| Sbjct 10847783 CCAATAACGCCGCAGCCGATGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCTCGTGT 10847842 Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAATATACTC 23736 | || |||| || |||||| || | ||||||||| | | |||| || | || || Sbjct 10847843 CCACCCTGGCCAAGATCATCGGCATCGGCGTGCACGACAACGGTGCGTCCGATGATGCTG 10847902 Query 23737 AACGGC-CCAAACAGGGTTATCACGTTGTCGCTCATGTGTATGGCCGTGAGTGCGGTGCA 23795 |||| || || || || ||| | |||| | |||| || || || | || ||| Sbjct 10847903 T-CGGCGCCGAAGAGCGTGATCTTGGAGTCGGTGATGT---TGACCTTG---GTGGGGCA 10847955 Query 23796 GCCCGCAGAGCGCAC---GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGC 23852 | | | | | | | ||||||||| ||||| | ||| || | | || || |||| || Sbjct 10847956 GTCGCCGGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGACGGTTCTCGTCGACGGGAGC 10848015 Query 23853 GCCGTGTCTCTGGCGGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGT 23912 |||||| || || ||||| |||||| || | ||| ||||||| ||| || | Sbjct 10848016 GCCGTGCTCCTTGCCATACGGGTTGAAGTGCGGTCCGGACGACATGCAGCCATTGGTGTT 10848075 Query 23913 GTCGCCGAATTCGTGCACGTGAAAACCGTGCAGCCC 23948 ||| || || ||||||||||| || ||||| || || Sbjct 10848076 GTCTCCAAACTCGTGCACGTGGAATCCGTGGAGACC 10848111 >seq1 Length=23539531 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| || |||||||| || ||||| ||||| | | Sbjct 4075142 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 4075083 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || || | ||||||||||| ||||| || | || || | |||||| || ||| Sbjct 4075082 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 4075023 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| ||||| || |||||| || || | ||| || ||| |||||| Sbjct 4075022 ATGCCCTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACC 4074963 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | ||||| || || || ||||| Sbjct 4074962 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916 Score = 107 bits (118), Expect = 2e-18 Identities = 164/234 (70%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| |||| |||||||||||| |||||||||||||| | Sbjct 10088942 CCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 10088883 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| || | || || | |||||| || || Sbjct 10088882 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 10088823 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||||| ||| || | ||| |||||| || || Sbjct 10088822 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACC 10088763 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182 || | || ||||||||||| || | || || || || || ||||| ||| || Sbjct 10088762 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTAT 10088709 >seq9 Length=20829647 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| || | || |||||||| || ||||| ||||| | | Sbjct 5792469 CCACCACGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5792528 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 || || | ||||||||||||| || || || |||| | | |||||| || ||| Sbjct 5792529 AGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGG 5792588 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | | | ||||| ||||| Sbjct 5792589 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGACC 5792648 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||| ||| |||||||||||||| | || || || || |||||||| ||| Sbjct 5792649 TCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATATTG 5792699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422219990462204