Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq4 116 3e-21
seq1 116 3e-21
seq9 93.3 4e-14
>seq4
Length=24153973
Score = 116 bits (128), Expect = 3e-21
Identities = 230/336 (68%), Gaps = 11/336 (3%)
Strand=Plus/Plus
Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676
||||| | ||||||||| | ||| | |||| |||||||| | |||||| ||| |||
Sbjct 10847783 CCAATAACGCCGCAGCCGATGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCTCGTGT 10847842
Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAATATACTC 23736
| || |||| || |||||| || | ||||||||| | | |||| || | || ||
Sbjct 10847843 CCACCCTGGCCAAGATCATCGGCATCGGCGTGCACGACAACGGTGCGTCCGATGATGCTG 10847902
Query 23737 AACGGC-CCAAACAGGGTTATCACGTTGTCGCTCATGTGTATGGCCGTGAGTGCGGTGCA 23795
|||| || || || || ||| | |||| | |||| || || || | || |||
Sbjct 10847903 T-CGGCGCCGAAGAGCGTGATCTTGGAGTCGGTGATGT---TGACCTTG---GTGGGGCA 10847955
Query 23796 GCCCGCAGAGCGCAC---GTTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGC 23852
| | | | | | | ||||||||| ||||| | ||| || | | || || |||| ||
Sbjct 10847956 GTCGCCGGTGGCCTCAATGTTGCCCAGATCGCCCAGGTGACGGTTCTCGTCGACGGGAGC 10848015
Query 23853 GCCGTGTCTCTGGCGGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGT 23912
|||||| || || ||||| |||||| || | ||| ||||||| ||| || |
Sbjct 10848016 GCCGTGCTCCTTGCCATACGGGTTGAAGTGCGGTCCGGACGACATGCAGCCATTGGTGTT 10848075
Query 23913 GTCGCCGAATTCGTGCACGTGAAAACCGTGCAGCCC 23948
||| || || ||||||||||| || ||||| || ||
Sbjct 10848076 GTCTCCAAACTCGTGCACGTGGAATCCGTGGAGACC 10848111
>seq1
Length=23539531
Score = 116 bits (128), Expect = 3e-21
Identities = 162/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| |||| || |||||||| || ||||| ||||| | |
Sbjct 4075142 CCACCACGCAGGCGGAGCACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 4075083
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || || | ||||||||||| ||||| || | || || | |||||| || |||
Sbjct 4075082 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 4075023
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||| ||||| || |||||| || || | ||| || ||| ||||||
Sbjct 4075022 ATGCCCTCCTTATCCTGGATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACC 4074963
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|||| ||| |||||||||||||| | ||||| || || || |||||
Sbjct 4074962 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916
Score = 107 bits (118), Expect = 2e-18
Identities = 164/234 (70%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | |||||||| |||| |||||||||||| |||||||||||||| |
Sbjct 10088942 CCACCACGCAGGCGGAGCACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAG 10088883
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
||||| || | || |||||||| ||||| || | || || | |||||| || ||
Sbjct 10088882 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 10088823
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| ||||| ||||| ||||| ||| || | ||| |||||| || ||
Sbjct 10088822 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACC 10088763
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182
|| | || ||||||||||| || | || || || || || ||||| ||| ||
Sbjct 10088762 TCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTAT 10088709
>seq9
Length=20829647
Score = 93.3 bits (102), Expect = 4e-14
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || ||||| | || |||| || | || |||||||| || ||||| ||||| | |
Sbjct 5792469 CCACCACGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5792528
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
|| || | ||||||||||||| || || || |||| | | |||||| || |||
Sbjct 5792529 AGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGG 5792588
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| || |||||||| |||||| || || | | | ||||| |||||
Sbjct 5792589 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGACC 5792648
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|||| ||| |||||||||||||| | || || || || |||||||| |||
Sbjct 5792649 TCCAAGGTGATGGTCTTGCCGGTCAGAGTCTTAACGAAAATTTGCATATTG 5792699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422219990462204
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |