Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 497 1e-135 seq1 134 1e-26 seq3570 131 2e-25 seq9 127 2e-24 seq4 122 9e-23 seq671 84.2 2e-11 >seq2 Length=21544594 Score = 497 bits (550), Expect = 1e-135 Identities = 560/746 (75%), Gaps = 8/746 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| ||||| || ||||||||||||||||||||||| ||||||||||| | |||| Sbjct 8575854 AGGCTGAGGCTTCTTTCTGGACCGTCGAGGAGGTGGATTTGTCCAAGGACCTTACTGACT 8575795 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 || | ||| |||| ||| ||||||||||||||||| ||||||||||||||| || |||| Sbjct 8575794 GGCACCGCCTGAAGGACGACGAGCGCCATTTCATCTCGCACGTGCTGGCCTTCTTTGCCG 8575735 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 || || |||||||| |||||||| ||||| ||||| ||| ||||||||||||| | Sbjct 8575734 CCTCTGATGGCATCGTAAACGAGAACCTGGTGGAGCGATTCAGTCAGGAGGTGCAGATCA 8575675 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | ||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 8575674 CGGAGGCACGATGCTTCTACGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGT 8575615 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA---AGCTCCGTTTGTTGA 116951 | | |||||||| ||| | || | | | || || || |||| | Sbjct 8575614 ACAGTGTTTTGATCGACACTTACATCCGGGATCCACACCAGCGAGAGTACC---TGTTCA 8575558 Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 |||| ||||| ||||||||| || || ||||| || ||||| ||| ||||||| Sbjct 8575557 ACGCTATCGAAACGATGCCGGCTGTGAAGCGCAAGGCAGACTGGGCCCTGTCCTGGATCT 8575498 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 | || ||| ||||| |||||| | | ||||| || ||||| |||||| ||| Sbjct 8575497 CGTCCAAGTCGGCTAATTTCGGGGAGCGCATCATCGCCTTTGCCGCCGTGGAGGGCATCT 8575438 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 |||| ||||| |||||| |||| || ||||| ||||| ||||| || ||||| || Sbjct 8575437 TCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTTAAGAAGCGCGGTCTGATGCCTGGAT 8575378 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 |||| ||| ||||||||| ||||| | |||||||| |||| |||||||||||| Sbjct 8575377 TGACCTTCTCCAACGAGCTGATCTCTCGCGACGAGGGCTTGCACTGCGACTTTGCCGTGC 8575318 Query 117192 TGCTGTTCAAGCATTTGGTGCAGCGACCGA-GCGCGGCGCGCGTCAGGGAGATCGTCACC 117250 || ||||| |||| ||||||||||||| | ||||| |||| ||| |||||| || | Sbjct 8575317 TGATGTTCCAGCACCTGGTGCAGCGACCCAAGCGCGA-GCGCATCATCGAGATCATCCGC 8575259 Query 117251 GACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGA 117310 |||||||| ||||| |||||| ||||||||||| || ||||| || | || | || Sbjct 8575258 GACGCGGTGGCCATTGAGCAGGAGTTCCTCACCGATGCCCTGCCCGTCAATTTGATCGGC 8575199 Query 117311 CTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAG 117370 | || ||||| |||||| || ||||| |||||||| || ||| | |||| | ||| Sbjct 8575198 ATGAACTGCGACCTGATGTCCCAGTACATTGAGTTCGTAGCGGACCGTTTGCTCGTGGAG 8575139 Query 117371 CTGGTCGGCGCCAAGCACTACAACAC 117396 ||| || | ||| ||||||||| Sbjct 8575138 TTGGGCGTTGGAAAGATCTACAACAC 8575113 >seq1 Length=23539531 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| ||||| ||||||||| | || || || | | Sbjct 4074916 ATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCT 4074975 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| || || | || || |||||||| ||| | || ||| Sbjct 4074976 GACACCATCGAGAATGTCAAGGCTAAGATCCAGGATAAGGAGGGCATTCCCCCAGATCAG 4075035 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| || | ||||| || |||||||||| Sbjct 4075036 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTGTCCGACTACAAC 4075095 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| | || ||||| | ||| | ||| || | || || Sbjct 4075096 ATCCAGAAGGAGTCGACCCTGCACTTGGTGCTCCGCCTGCGTGGTGG 4075142 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||||||||| |||||||| | || |||||| | Sbjct 10088713 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 10088772 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| |||| | || |||| |||||||| || || || | || Sbjct 10088773 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 10088832 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | ||||||||| ||||| Sbjct 10088833 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 10088892 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||| ||||||||| |||| ||||| | ||| | ||| || | || || Sbjct 10088893 AACATTCAGAAGGAGTCCACTCTGCACTTGGTGCTCCGCCTGCGTGGTGG 10088942 >seq3570 Length=216 Score = 131 bits (144), Expect = 2e-25 Identities = 155/205 (76%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| |||| | Sbjct 7 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACCTTGGAGGTCGA-GCCATC 65 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | | | | |||| |||||| || || | ||||| ||||| |||||| | || | Sbjct 66 CGATACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATC 124 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||| || || |||||||| |||| ||||| || |||||||| Sbjct 125 AGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACA 184 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||| | || || || Sbjct 185 ACATCCAGAAGGAGTCGACCCTTCA 209 >seq9 Length=20829647 Score = 127 bits (140), Expect = 2e-24 Identities = 154/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || || || ||||| ||||||||| | || ||||| ||| Sbjct 5792698 AATATGCAAATTTTCGTTAAGACTCTGACCGGCAAGACCATCACCTTGGAGGTCGA-GCC 5792640 Query 40747 A-CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | | | |||||| || || | ||||| ||||| |||||| | || Sbjct 5792639 ATCCGATACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGA 5792580 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || | || | ||| || || |||||||| |||| ||||| || |||||| Sbjct 5792579 TCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTA 5792520 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||| | || || || Sbjct 5792519 CAACATCCAGAAGGAGTCGACCCTTCA 5792493 Score = 122 bits (134), Expect = 9e-23 Identities = 153/205 (75%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA-C 40748 ||||| || ||||| || || || || ||||| |||||||| | || || || |||| | Sbjct 5792467 ATGCAGATCTTCGTGAAGACTCTGACTGGCAAGACCATCACTTTGGAGGTTGA-GCCATC 5792409 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||| | | | | |||| |||||| || || | ||||| ||||| |||||| | || | Sbjct 5792408 CGATACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGATC 5792350 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||| || || |||||||| |||| ||||| || |||||||| Sbjct 5792349 AGCAGCGTTTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACTCTGTCCGACTACA 5792290 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||| | || || || Sbjct 5792289 ACATCCAGAAGGAGTCGACCCTTCA 5792265 >seq4 Length=24153973 Score = 122 bits (134), Expect = 9e-23 Identities = 151/204 (74%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| ||||| |||||||| | || || || |||| | Sbjct 3789827 ATGCAGATCTTCGTGAAGACTCTCACTGGCAAGACCATCACTTTGGAGGTTGA-GCCATC 3789769 Query 40750 G-ACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 | ||| | | | | | |||| || |||| || || ||||| |||||| | || || Sbjct 3789768 GGACACCATTGAGAATGTGAAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCAGATCA 3789709 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| || ||||| |||| |||||||| ||| ||||| Sbjct 3789708 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGACGGACGCACCCTGTCCGATTACAA 3789649 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 3789648 CATCCAGAAGGAGTCAACCCTTCA 3789625 Score = 122 bits (134), Expect = 9e-23 Identities = 236/348 (68%), Gaps = 3/348 (1%) Strand=Plus/Minus Query 139360 CGGCCTGCCGCGCGGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGG 139419 ||||||| | || || ||||| ||||||||||||||||| || ||| | ||| || Sbjct 10848124 CGGCCTGGCCAAGGGTCTCCACGGATTCCACGTGCACGAGTTTGGAGACAACACCAATGG 10848065 Query 139420 GTGCACGTCGGCCGGCGAGCACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGACGC 139479 |||| |||| |||| |||||||||||| || ||| |||||||| |||| || Sbjct 10848064 CTGCATGTCGTCCGGACCGCACTTCAACCCGTATGGCAAGGAGCACGGCGCTCCCGTCGA 10848005 Query 139480 CGAGATCAGGCACGTCGGCGACCTGGGCAACCTCGAGTCGGCGGGCCGCGACGCGCTCAC 139539 ||||| | | ||| | ||||| ||||||||| | || ||| | ||||| | ||| Sbjct 10848004 CGAGAACCGTCACCTGGGCGATCTGGGCAACATTGA---GGCCACCGGCGACTGCCCCAC 10847948 Query 139540 CGAGGTGAGCCTGACGGACGGCGTCGTGTCCCTGTACGGTCCGCACAGCATCATCGGACG 139599 | |||| | | | || ||| | | | || | ||| | |||||||||||||||| Sbjct 10847947 CAAGGTCAACATCACCGACTCCAAGATCACGCTCTTCGGCGCCGACAGCATCATCGGACG 10847888 Query 139600 GAGTCTGGTCGTGCACACGGACAGGGACGATCTGGGCCTCACCGACCATCCATTGAGCAA 139659 | | ||||||||| | || || ||||| |||| | || ||||||| Sbjct 10847887 CACCGTTGTCGTGCACGCCGATGCCGATGATCTTGGCCAGGGTGGACACGAGCTGAGCAA 10847828 Query 139660 GACCACCGGCAACTCGGGCGGCCGGCTCGCGTGCGGCATCATCGGGAT 139707 | | || |||||| | || | ||| ||| |||||| | || || || Sbjct 10847827 GTCAACGGGCAACGCTGGTGCCCGCATCGGCTGCGGCGTTATTGGCAT 10847780 >seq671 Length=216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 128/180 (71%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC-GACAGCGTGCAAACGCTCAAGGA 40772 || || || ||||||||| | || || || |||| | |||| | | | | | |||| Sbjct 214 ACCGGAAAGACCATCACCCTGGAAGTTGA-GCCATCAGACACCATTGAGAATGTGAAGGC 156 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| || || | || ||||| || || |||| ||| ||||| Sbjct 155 TAAGATCCAAGACAAGGAGGGAATTCCTCCAGATCAGCAGCGTCTGATCTTCGCCGGCAA 96 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || || | ||||| || ||||||||||||||||||||| | || || || Sbjct 95 GCAGCTCGAGGATGGACGCACTCTTTCTGACTACAACATCCAGAAGGAGTCGACCCTTCA 36 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515170131811440