Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq1 237 1e-57
seq3570 122 8e-23
seq9 120 3e-22
seq4 111 1e-19
seq671 104 2e-17
>seq1
Length=23539531
Score = 237 bits (262), Expect = 1e-57
Identities = 700/1071 (65%), Gaps = 26/1071 (2%)
Strand=Plus/Plus
Query 132882 ACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTTTTC 132941
||||| |||| |||| | || || || || ||||||| ||| ||||| || |||||
Sbjct 10003403 ACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTA 10003462
Query 132942 AGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTCGGCG 133001
|| | | ||| | ||||||||||||| | || | || | || |||||
Sbjct 10003463 AGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTCGGCC 10003522
Query 133002 ACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCATGTTT 133061
||| || || | ||| ||||||||||||||||| | | |||| ||||||||||| ||
Sbjct 10003523 ACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTTA 10003582
Query 133062 ATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTG-ACATGCTGTGG 133120
|| | |||| | ||| ||||| |||||||| | |||| || | || | ||| ||
Sbjct 10003583 ATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGAT-CTCGCACCTTCTGGGG 10003641
Query 133121 TATTTCGTCAATGTTCTGCACGGA-CCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCG 133179
||| |||||||| || | || ||| | ||| | |||| ||| || || |
Sbjct 10003642 TATGGTCTCAATGTTTTGAATCGATCCCCTGCTCGAT-ATGATCTGGTTCTTCATGTC-G 10003699
Query 133180 GAGTGTAA-ATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAAC 133238
|| | | ||| || ||| |||| | | | || ||||||||||| || ||
Sbjct 10003700 TCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAAT 10003759
Query 133239 TCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTG 133298
||||||| ||||| || | | |||| |||| ||| |||| ||||| ||||| |||
Sbjct 10003760 TCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTCATTG 10003819
Query 133299 TTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTCTT 133358
||||| | |||||| || || | || ||||||||| || || | || ||||| |
Sbjct 10003820 TTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGG 10003879
Query 133359 ACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCACAGATT-GTTGGAATG 133417
|| |||| ||| || ||| || ||||| | |||||||||||| || |||||
Sbjct 10003880 ACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTGG---- 10003935
Query 133418 ATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCCCTGCTCACCGGACT 133477
| | | ||| | ||| | |||||||| || |||||||||| ||
Sbjct 10003936 ------------CACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCT 10003983
Query 133478 GTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAGCTAGCCTCCAAAGC 133537
| || ||| | ||| || || || | | | | |||||| |||||||| || ||||| ||
Sbjct 10003984 GCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGC 10004043
Query 133538 GGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACCTGGCATCGTCGCTATCGTA 133597
| || ||||||| ||||| || | || | || | ||| || ||||| |||||
Sbjct 10004044 GCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTTCGTA 10004103
Query 133598 GGCGATGTCGAGAAGAACAAACGCGTCGGCCAAACCCTGTATGCCGACGCCGATGGGTCG 133657
| || | |||| || || || || || ||||| || || | ||| | ||| ||
Sbjct 10004104 CGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACG 10004163
Query 133658 ATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGTTGACGTCGATGATCTT 133717
||| | |||| | || | ||| | | ||||| | |||| || || |||||
Sbjct 10004164 ATGCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTT 10004223
Query 133718 GTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGCAAAACATAGTCAAATGTCTT 133777
||| ||||| | | || || || | | || ||| | ||| | |||||
Sbjct 10004224 GTTTAGATTTTTGGTAACTATCTTTGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTT 10004283
Query 133778 GGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAGATTACAAACGGCCGTCTC 133837
| || ||| |||| || |||||| ||| || ||| | || || || || ||||
Sbjct 10004284 --CTCCGGCGT-GACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTC 10004340
Query 133838 GTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAA 133897
| | | |||| | ||||| || | ||| | ||||||||| || |||||||| |
Sbjct 10004341 ATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTAC 10004400
Query 133898 AtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGG 133948
||| | || ||||| | |||||| |||||| | |||||||||||
Sbjct 10004401 ATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGG 10004451
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||||| || || |||||||| ||| || |||||| ||||||
Sbjct 4075125 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 4075066
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || || ||| |||| |||||||||||||| || || ||||||||||| ||
Sbjct 4075065 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTG 4075006
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
|| || || || | |||| |||||| | ||| ||||| | ||| | || ||
Sbjct 4075005 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTT 4074946
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|||||| || ||||| || || ||||||||
Sbjct 4074945 GCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||||| || |||||||| || || | ||||| ||| ||
Sbjct 10088925 CACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTC 10088866
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
||||| || |||||| |||| |||||||||||||| ||||| || || || |||||
Sbjct 10088865 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 10088806
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||| || ||| || | ||||| || |||| |||||||| | || | || ||
Sbjct 10088805 AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 10088746
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| || || || || || || ||||||||
Sbjct 10088745 GCCCGTGAGGGTCTTAACGAAGATCTGCAT 10088716
>seq3570
Length=216
Score = 122 bits (134), Expect = 8e-23
Identities = 153/210 (73%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| || || |||||||| ||| || |||||| |||||
Sbjct 215 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 156
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| ||||| ||| |||| | |||||||||||| || || || |||||||||||
Sbjct 155 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 96
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | ||| || | ||||||||| | ||| | || |||
Sbjct 95 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 36
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| |||||||| || || || |||||||||
Sbjct 35 CCAGTCAGAGTCTTCACGAAGATCTGCATG 6
>seq9
Length=20829647
Score = 120 bits (132), Expect = 3e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| || || |||||||| ||| || |||||| |||||
Sbjct 5792487 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 5792546
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
||||| ||||| ||| | || | |||||||||||| || || || |||||||||||
Sbjct 5792547 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 5792606
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| || || || | || | ||| || | ||||||||| | ||| | || |||
Sbjct 5792607 ATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 5792666
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||||||||||| || || ||||| |||||
Sbjct 5792667 CCGGTCAGAGTCTTAACGAAAATTTGCAT 5792695
Score = 118 bits (130), Expect = 9e-22
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571
|| ||||| | | || |||||||| | || ||||| || || |||||||| ||| |
Sbjct 5792241 CCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5792300
Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631
| |||||| ||||| ||||| ||||| ||| |||| | |||||||||||| || ||
Sbjct 5792301 AGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 5792360
Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691
|| ||||||||||| || || || || | |||| ||| || | ||| |||
Sbjct 5792361 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 5792420
Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739
|| | || | || ||||| |||||||| || || || |||||||||
Sbjct 5792421 TCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 5792468
>seq4
Length=24153973
Score = 111 bits (122), Expect = 1e-19
Identities = 226/335 (67%), Gaps = 3/335 (1%)
Strand=Plus/Plus
Query 46984 CCGATTATGCCGCAGGCGATGCGACCGCCCGAGTTGCCGGTGGTCTTGCTCAATGGATGA 47043
|| || | ||||||| ||||||| | || | |||||| || | |||||||| ||
Sbjct 10847783 CCAATAACGCCGCAGCCGATGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCTCGTGT 10847842
Query 47044 CCGCCGAGACCCAAGTCGTCGCGGTCCGAGTGAATGACCAGACTGCGTCCGATGACGCTG 47103
|| || | || | || ||| || | ||| | ||| | |||||||||||| ||||
Sbjct 10847843 CCACCCTGGCCAAGATCATCGGCATCGGCGTGCACGACAACGGTGCGTCCGATGATGCTG 10847902
Query 47104 TATTCGCCGAAAAGACTCATCACGTTGTCGATCTTATCGATTTCGGTCAAACTGTTTGAT 47163
| ||||||| || | ||| | |||| | | | || | ||| | ||
Sbjct 10847903 TCGGCGCCGAAGAGCGTGATCTTGGAGTCGGTGATGTTGACCTTGGTGGGGCAGTCGCCG 10847962
Query 47164 TTTTTCGCTTCAATGTTACCCAGATCGCCTACGTGACGCTCGGCGGCGTTGGGAGCGCCG 47223
| || |||||||| ||||||||||| | |||||| | || || ||||||||||
Sbjct 10847963 GTG---GCCTCAATGTTGCCCAGATCGCCCAGGTGACGGTTCTCGTCGACGGGAGCGCCG 10848019
Query 47224 TGATTGCGGCCCAACGGATTATAGTGTTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCG 47283
|| | ||| |||| || |||| |||| |||| ||||||| ||| | ||||
Sbjct 10848020 TGCTCCTTGCCATACGGGTTGAAGTGCGGTCCGGACGACATGCAGCCATTGGTGTTGTCT 10848079
Query 47284 CCGAATTCGTGCACGTGAAATCCGTGAAGCCCCTT 47318
|| || ||||||||||| |||||||| || |||||
Sbjct 10848080 CCAAACTCGTGCACGTGGAATCCGTGGAGACCCTT 10848114
Score = 109 bits (120), Expect = 5e-19
Identities = 150/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588
||||||||| | || ||||| || || |||||||||||| || ||||| || ||
Sbjct 3789618 CACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 3789677
Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648
|| || || || ||| |||| |||||||||||||| || || || |||||||| ||
Sbjct 3789678 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTG 3789737
Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708
||| || || || | || | |||||||| ||| ||||| | || | || ||
Sbjct 3789738 AATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTT 3789797
Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
||| || ||||| || || || ||||||||
Sbjct 3789798 GCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/238 (68%), Gaps = 19/238 (8%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| || || |||||||||||| || ||||| || ||
Sbjct 3789847 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3789906
Query 118590 AGCTGTTT----------------TCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633
|| || || ||| ||| |||| |||||||||||||| || || ||
Sbjct 3789907 AGTTGCTTGCCGGTGGATGAGGCTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAAT 3789966
Query 118634 GCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTC 118693
|||||||| || ||| || ||||| | || | |||||| | ||| |||||
Sbjct 3789967 TCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCAATGGTGTCAGACGGCTCTACCTC 3790026
Query 118694 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA---TGGCTTATTCT 118748
|| ||| | || || ||||||| || || ||||| ||||||| ||| |||||||
Sbjct 3790027 GAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCATTTTGGATTATTCT 3790084
>seq671
Length=216
Score = 104 bits (114), Expect = 2e-17
Identities = 93/117 (79%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | || ||||| || || |||||||| || | |||||| |||||||
Sbjct 30 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTCG 89
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646
||||| || || ||| |||| |||||||||||||| ||||| || ||||||||||||
Sbjct 90 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCT 146
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433790116000348
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