Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq1 237 1e-57 seq3570 122 8e-23 seq9 120 3e-22 seq4 111 1e-19 seq671 104 2e-17 >seq1 Length=23539531 Score = 237 bits (262), Expect = 1e-57 Identities = 700/1071 (65%), Gaps = 26/1071 (2%) Strand=Plus/Plus Query 132882 ACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTTTTC 132941 ||||| |||| |||| | || || || || ||||||| ||| ||||| || ||||| Sbjct 10003403 ACGGTGAACTGAATGGCATTCGCAGCTGGCTTGGTGCGCAGATAGTACATTCCGGTTTTA 10003462 Query 132942 AGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTCGGCG 133001 || | | ||| | ||||||||||||| | || | || | || ||||| Sbjct 10003463 AGACCTGCTTTCCAGGAGTAAAAGTGTATGGAAGTCAGCTTTCCATAGTTTGGCTCGGCC 10003522 Query 133002 ACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCATGTTT 133061 ||| || || | ||| ||||||||||||||||| | | |||| ||||||||||| || Sbjct 10003523 ACATGTATGTTGAACGACTGACTCTGATCTATGAACGCACCACGATCGGCGGCCATTTTA 10003582 Query 133062 ATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTG-ACATGCTGTGG 133120 || | |||| | ||| ||||| |||||||| | |||| || | || | ||| || Sbjct 10003583 ATCGTGGACTTGACTGAGATTTCCCACACCGTCTTGTACAGAT-CTCGCACCTTCTGGGG 10003641 Query 133121 TATTTCGTCAATGTTCTGCACGGA-CCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCCG 133179 ||| |||||||| || | || ||| | ||| | |||| ||| || || | Sbjct 10003642 TATGGTCTCAATGTTTTGAATCGATCCCCTGCTCGAT-ATGATCTGGTTCTTCATGTC-G 10003699 Query 133180 GAGTGTAA-ATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAAC 133238 || | | ||| || ||| |||| | | | || ||||||||||| || || Sbjct 10003700 TCGTCCCACAAGTCCAGTTCGGTTAGGTCGCGCAACAAATGATGGTTGACCACCTGGAAT 10003759 Query 133239 TCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTG 133298 ||||||| ||||| || | | |||| |||| ||| |||| ||||| ||||| ||| Sbjct 10003760 TCGCCGGACAGAACTCGCCGGGTGTATATGTTCGTGGTGTACGGCTCGAAGGATTCATTG 10003819 Query 133299 TTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTCTT 133358 ||||| | |||||| || || | || ||||||||| || || | || ||||| | Sbjct 10003820 TTGCCCATTATCTGAGCTGTAGATGCAGTGGGCATGGGAGCAACGAGCAGTGAGTTCCGG 10003879 Query 133359 ACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCACAGATT-GTTGGAATG 133417 || |||| ||| || ||| || ||||| | |||||||||||| || ||||| Sbjct 10003880 ACACCGTGCTTCTTAATGGACTCCTTCAATTTCTGCCAGTCCCACAGGTTCGTTGG---- 10003935 Query 133418 ATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCCCTGCTCACCGGACT 133477 | | | ||| | ||| | |||||||| || |||||||||| || Sbjct 10003936 ------------CACCTTGTCCCACATGTCGTACTGCAAAATTCCTTTGCTCACCGGGCT 10003983 Query 133478 GTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAGCTAGCCTCCAAAGC 133537 | || ||| | ||| || || || | | | | |||||| |||||||| || ||||| || Sbjct 10003984 GCCCTCGTAGGTTTCGTATGGACCTTCGGTCTGGGCCAGTTCGCAGCTGGCTTCCAAGGC 10004043 Query 133538 GGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACCTGGCATCGTCGCTATCGTA 133597 | || ||||||| ||||| || | || | || | ||| || ||||| ||||| Sbjct 10004044 GCCATAGTAAATCGTTTCAAATATCTGCTGATTCAAGAGACCGGCTTCTTCGCTTTCGTA 10004103 Query 133598 GGCGATGTCGAGAAGAACAAACGCGTCGGCCAAACCCTGTATGCCGACGCCGATGGGTCG 133657 | || | |||| || || || || || ||||| || || | ||| | ||| || Sbjct 10004104 CGGGAAACGCATGAGAATCAAGGCATCAGCGAATCCCTGAATACCAATGCCCACGGGACG 10004163 Query 133658 ATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGTTGACGTCGATGATCTT 133717 ||| | |||| | || | ||| | | ||||| | |||| || || ||||| Sbjct 10004164 ATGCCTCAAATTGGACTTCCTTGCCTCTGGCAGCGGATAATAATTGATATCAATTATCTT 10004223 Query 133718 GTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAGCAAAACATAGTCAAATGTCTT 133777 ||| ||||| | | || || || | | || ||| | ||| | ||||| Sbjct 10004224 GTTTAGATTTTTGGTAACTATCTTTGTGACTTCCTTGAGCTTCTTGAAATCATACGTCTT 10004283 Query 133778 GGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAGATTACAAACGGCCGTCTC 133837 | || ||| |||| || |||||| ||| || ||| | || || || || |||| Sbjct 10004284 --CTCCGGCGT-GACGAACATGTTGAGGGCGATGGAGGCCAAGTTGCAGACTGCAATCTC 10004340 Query 133838 GTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGTGCCCAA 133897 | | | |||| | ||||| || | ||| | ||||||||| || |||||||| | Sbjct 10004341 ATCCGGTGAGGAATATTCAACGATTTCCGTGCACAAGTTGCTGCACTTAATGGTGCCTAC 10004400 Query 133898 AtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGG 133948 ||| | || ||||| | |||||| |||||| | ||||||||||| Sbjct 10004401 ATTCTGCTGGTTGCTCTTCCTGTTGCAAGCGTCCTTGAAGAGCATGTACGG 10004451 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||| ||| || |||||| |||||| Sbjct 4075125 CACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTC 4075066 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || ||| |||| |||||||||||||| || || ||||||||||| || Sbjct 4075065 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTG 4075006 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| |||||| | ||| ||||| | ||| | || || Sbjct 4075005 GATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTT 4074946 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||| || ||||| || || |||||||| Sbjct 4074945 GCCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || |||||||| || || | ||||| ||| || Sbjct 10088925 CACCAAGTGCAGAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTC 10088866 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || |||||| |||| |||||||||||||| ||||| || || || ||||| Sbjct 10088865 CAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTG 10088806 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || ||| || | ||||| || |||| |||||||| | || | || || Sbjct 10088805 AATCTTGGCTTTGACATTTTCGATAGTATCCGACGGTTCGACCTCAAGAGTGATGGTCTT 10088746 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || || || || || |||||||| Sbjct 10088745 GCCCGTGAGGGTCTTAACGAAGATCTGCAT 10088716 >seq3570 Length=216 Score = 122 bits (134), Expect = 8e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| || |||||| ||||| Sbjct 215 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 156 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||| | |||||||||||| || || || ||||||||||| Sbjct 155 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 96 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| || | ||||||||| | ||| | || ||| Sbjct 95 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 36 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || |||||||| || || || ||||||||| Sbjct 35 CCAGTCAGAGTCTTCACGAAGATCTGCATG 6 >seq9 Length=20829647 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| || |||||| ||||| Sbjct 5792487 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 5792546 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| | || | |||||||||||| || || || ||||||||||| Sbjct 5792547 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 5792606 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||| || | ||||||||| | ||| | || ||| Sbjct 5792607 ATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 5792666 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||||||| || || ||||| ||||| Sbjct 5792667 CCGGTCAGAGTCTTAACGAAAATTTGCAT 5792695 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | || |||||||| | || ||||| || || |||||||| ||| | Sbjct 5792241 CCACCGCGCAGACGCAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 5792300 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| ||||| ||||| ||||| ||| |||| | |||||||||||| || || Sbjct 5792301 AGAGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGG 5792360 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || || || | |||| ||| || | ||| ||| Sbjct 5792361 ATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACC 5792420 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || | || | || ||||| |||||||| || || || ||||||||| Sbjct 5792421 TCCAAAGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATG 5792468 >seq4 Length=24153973 Score = 111 bits (122), Expect = 1e-19 Identities = 226/335 (67%), Gaps = 3/335 (1%) Strand=Plus/Plus Query 46984 CCGATTATGCCGCAGGCGATGCGACCGCCCGAGTTGCCGGTGGTCTTGCTCAATGGATGA 47043 || || | ||||||| ||||||| | || | |||||| || | |||||||| || Sbjct 10847783 CCAATAACGCCGCAGCCGATGCGGGCACCAGCGTTGCCCGTTGACTTGCTCAGCTCGTGT 10847842 Query 47044 CCGCCGAGACCCAAGTCGTCGCGGTCCGAGTGAATGACCAGACTGCGTCCGATGACGCTG 47103 || || | || | || ||| || | ||| | ||| | |||||||||||| |||| Sbjct 10847843 CCACCCTGGCCAAGATCATCGGCATCGGCGTGCACGACAACGGTGCGTCCGATGATGCTG 10847902 Query 47104 TATTCGCCGAAAAGACTCATCACGTTGTCGATCTTATCGATTTCGGTCAAACTGTTTGAT 47163 | ||||||| || | ||| | |||| | | | || | ||| | || Sbjct 10847903 TCGGCGCCGAAGAGCGTGATCTTGGAGTCGGTGATGTTGACCTTGGTGGGGCAGTCGCCG 10847962 Query 47164 TTTTTCGCTTCAATGTTACCCAGATCGCCTACGTGACGCTCGGCGGCGTTGGGAGCGCCG 47223 | || |||||||| ||||||||||| | |||||| | || || |||||||||| Sbjct 10847963 GTG---GCCTCAATGTTGCCCAGATCGCCCAGGTGACGGTTCTCGTCGACGGGAGCGCCG 10848019 Query 47224 TGATTGCGGCCCAACGGATTATAGTGTTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCG 47283 || | ||| |||| || |||| |||| |||| ||||||| ||| | |||| Sbjct 10848020 TGCTCCTTGCCATACGGGTTGAAGTGCGGTCCGGACGACATGCAGCCATTGGTGTTGTCT 10848079 Query 47284 CCGAATTCGTGCACGTGAAATCCGTGAAGCCCCTT 47318 || || ||||||||||| |||||||| || ||||| Sbjct 10848080 CCAAACTCGTGCACGTGGAATCCGTGGAGACCCTT 10848114 Score = 109 bits (120), Expect = 5e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || ||||| || || |||||||||||| || ||||| || || Sbjct 3789618 CACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTC 3789677 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 || || || || ||| |||| |||||||||||||| || || || |||||||| || Sbjct 3789678 CAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTG 3789737 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | || | |||||||| ||| ||||| | || | || || Sbjct 3789738 AATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTT 3789797 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| || ||||| || || || |||||||| Sbjct 3789798 GCCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/238 (68%), Gaps = 19/238 (8%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||||||| || ||||| || || Sbjct 3789847 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3789906 Query 118590 AGCTGTTT----------------TCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTAT 118633 || || || ||| ||| |||| |||||||||||||| || || || Sbjct 3789907 AGTTGCTTGCCGGTGGATGAGGCTTCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAAT 3789966 Query 118634 GCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTC 118693 |||||||| || ||| || ||||| | || | |||||| | ||| ||||| Sbjct 3789967 TCCCTCCTTATCCTGAATCTTAGCCTTAACATTCTCAATGGTGTCAGACGGCTCTACCTC 3790026 Query 118694 GACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA---TGGCTTATTCT 118748 || ||| | || || ||||||| || || ||||| ||||||| ||| ||||||| Sbjct 3790027 GAGGGTGATGGTCTTTCCGGTCAAGGTCTTCACAAAGATCTGCATTTTGGATTATTCT 3790084 >seq671 Length=216 Score = 104 bits (114), Expect = 2e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| || | |||||| ||||||| Sbjct 30 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGTCCATCCTCG 89 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 ||||| || || ||| |||| |||||||||||||| ||||| || |||||||||||| Sbjct 90 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCCTCCTTGTCT 146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433790116000348