Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19] 7,619 sequences; 124,963,774 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 3e-13 >seq1 Length=23539531 Score = 91.5 bits (100), Expect = 3e-13 Identities = 419/646 (65%), Gaps = 33/646 (5%) Strand=Plus/Minus Query 249277 TTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAG 249336 || ||||| ||| ||||| |||||| | ||| | || ||||||||||| |||| ||| Sbjct 10004769 TTTGCCATTTATCTGGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAG 10004710 Query 249337 AACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGAC 249396 |||| ||||| || | | || || || || || |||| ||||||| | |||| Sbjct 10004709 AACACGGGCAAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGAT 10004650 Query 249397 TTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCC 249456 | |||||| ||||| ||||| |||| |||||| |||| | | || | | Sbjct 10004649 CTCTTCATGAAACGCGTGGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGT 10004590 Query 249457 CCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATAAGAAATACGAATC 249515 || | ||| ||| | |||| || ||||| |||| || |||||||||| Sbjct 10004589 CCAGGTCTCCACGAAGTGTGGGGCGATGAATTCGA-AAAGCTGTACGAGAAATACGA--G 10004533 Query 249516 CAACGGCATCGG--CAA---GACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTG 249567 ||| | |||| ||| || | ||||||| |||| ||||| | | | Sbjct 10004532 CAAGAGGGTCGGGCCAACCGAACGGTTAAGGCTCAATCCCTGTGGTTTGCCA---TCATT 10004476 Query 249568 GAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAG 249627 ||| | || | ||||| || ||||| | ||||| ||||| |||||| ||| Sbjct 10004475 GAGGCGCAAGTGGAGACCGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAG 10004416 Query 249628 AGTAACCAACGGCATCTTGGTACCA-TCCGCTCGTCAAATCTCTGTGCA--GAGGTGATT 249684 || ||||| | | || | || |||| | | | ||| | |||||| || | || Sbjct 10004415 AGCAACCAGCAGAATGTAGGCACCATTAAGTGCAGCAACT---TGTGCACGGAAATCGTT 10004359 Query 249685 CAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGG 249744 |||| || || ||| |||||||| ||||||||| |||| |||| ||| | | Sbjct 10004358 GAATATTCCTCACCGGATGAGATTGCAGTCTGCAACTTGGCCTCCATCGCCCTCAACATG 10004299 Query 249745 CACGTGAGGGCGGACAGGACGTTCGACTTCGAGCGTCTTCACCGGACGGC-GAAACA-GG 249802 ||| | | |||| | ||||| || ||| || | ||| ||| | | ||| | | Sbjct 10004298 TTCGTCACGCCGGAGAAGACGTATGATTTCAAGAAGC-TCA-AGGAAGTCACAAAGATAG 10004241 Query 249803 CGATCAAAAACCTCAACAAGGTGATTGATGTCAATTTTTACCCCCT---TGAGGAATGCA 249859 | |||||| || |||||| | |||||| |||||| ||| || || |||| | | Sbjct 10004240 TTACCAAAAATCTAAACAAGATAATTGATATCAATTATTATCCGCTGCCAGAGGCA---A 10004184 Query 249860 GGTTGTCCAACATGAAGCACCGTCCATGTGGGC-TGGGCGTTCAGG 249904 || |||||| ||| ||| ||||| |||||| | || |||||| Sbjct 10004183 GGAAGTCCAATTTGAGGCATCGTCC-CGTGGGCATTGGTATTCAGG 10004139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073661580601792