Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq1 91.5 3e-13
>seq1
Length=23539531
Score = 91.5 bits (100), Expect = 3e-13
Identities = 419/646 (65%), Gaps = 33/646 (5%)
Strand=Plus/Minus
Query 249277 TTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACTTGAAAAAG 249336
|| ||||| ||| ||||| |||||| | ||| | || ||||||||||| |||| |||
Sbjct 10004769 TTTGCCATTTATCTGGAACCCTGGCACTCGGATGTCTTTGAGTTCCTGGAACTGAAGAAG 10004710
Query 249337 AACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGGTCTCCGAC 249396
|||| ||||| || | | || || || || || |||| ||||||| | ||||
Sbjct 10004709 AACACGGGCAAAGAAGAGAATCGCGCACGCGATCTGTTTTACGCCCTGTGGATACCCGAT 10004650
Query 249397 TTGTTCATGCGCCGCGTCAAGGCCGACGGCGATTGGACGCTTCTTTCTCCGTCCGACGCC 249456
| |||||| ||||| ||||| |||| |||||| |||| | | || | |
Sbjct 10004649 CTCTTCATGAAACGCGTGGAGGCCAACGGTGATTGGTCGCTCATGTGCCCCCACAAGTGT 10004590
Query 249457 CCGGACCTCATCGATCTACACGGCGCCGACTTCGACCAAGC-CTATAAGAAATACGAATC 249515
|| | ||| ||| | |||| || ||||| |||| || ||||||||||
Sbjct 10004589 CCAGGTCTCCACGAAGTGTGGGGCGATGAATTCGA-AAAGCTGTACGAGAAATACGA--G 10004533
Query 249516 CAACGGCATCGG--CAA---GACAATCAAGGCTCGGACCCT---TTTTGCGAAGGTGGTG 249567
||| | |||| ||| || | ||||||| |||| ||||| | | |
Sbjct 10004532 CAAGAGGGTCGGGCCAACCGAACGGTTAAGGCTCAATCCCTGTGGTTTGCCA---TCATT 10004476
Query 249568 GAGTCCCAGATAGAGACAGGGGGGCCGTATTATTTGTTCAAAGACGCGTGCAACGCCAAG 249627
||| | || | ||||| || ||||| | ||||| ||||| |||||| |||
Sbjct 10004475 GAGGCGCAAGTGGAGACCGGAAATCCGTACATGCTCTTCAAGGACGCTTGCAACAGGAAG 10004416
Query 249628 AGTAACCAACGGCATCTTGGTACCA-TCCGCTCGTCAAATCTCTGTGCA--GAGGTGATT 249684
|| ||||| | | || | || |||| | | | ||| | |||||| || | ||
Sbjct 10004415 AGCAACCAGCAGAATGTAGGCACCATTAAGTGCAGCAACT---TGTGCACGGAAATCGTT 10004359
Query 249685 CAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAACCTGGCAAGCATCAATCTCGTGAGG 249744
|||| || || ||| |||||||| ||||||||| |||| |||| ||| | |
Sbjct 10004358 GAATATTCCTCACCGGATGAGATTGCAGTCTGCAACTTGGCCTCCATCGCCCTCAACATG 10004299
Query 249745 CACGTGAGGGCGGACAGGACGTTCGACTTCGAGCGTCTTCACCGGACGGC-GAAACA-GG 249802
||| | | |||| | ||||| || ||| || | ||| ||| | | ||| | |
Sbjct 10004298 TTCGTCACGCCGGAGAAGACGTATGATTTCAAGAAGC-TCA-AGGAAGTCACAAAGATAG 10004241
Query 249803 CGATCAAAAACCTCAACAAGGTGATTGATGTCAATTTTTACCCCCT---TGAGGAATGCA 249859
| |||||| || |||||| | |||||| |||||| ||| || || |||| | |
Sbjct 10004240 TTACCAAAAATCTAAACAAGATAATTGATATCAATTATTATCCGCTGCCAGAGGCA---A 10004184
Query 249860 GGTTGTCCAACATGAAGCACCGTCCATGTGGGC-TGGGCGTTCAGG 249904
|| |||||| ||| ||| ||||| |||||| | || ||||||
Sbjct 10004183 GGAAGTCCAATTTGAGGCATCGTCC-CGTGGGCATTGGTATTCAGG 10004139
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073661580601792
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |