Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20simulans_20[refseq_20GCF_5F000754195.2_202014-09-19]
7,619 sequences; 124,963,774 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq3570 136 3e-27
seq9 132 4e-26
seq4 125 6e-24
seq1 120 2e-22
>seq3570
Length=216
Score = 136 bits (150), Expect = 3e-27
Identities = 156/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| ||| ||| |||| |||
Sbjct 215 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 156
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| ||||| ||||| || || || || | ||||||||||||
Sbjct 155 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 96
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | | || ||| ||||||| ||| || ||||||
Sbjct 95 ATCTTGGCCTTGACGTTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 36
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| |||||||||||||| ||||| ||||||
Sbjct 35 CCAGTCAGAGTCTTCACGAAGATCTGCATG 6
>seq9
Length=20829647
Score = 132 bits (146), Expect = 4e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| ||| ||| |||| |||
Sbjct 5792487 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 5792546
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| ||||| ||||| || || || || | ||||||||||||
Sbjct 5792547 AGCTGCTTTCCGGCGAAAATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 5792606
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | | || ||| ||||||| ||| || ||||||
Sbjct 5792607 ATCTTGGCCTTGACATTCTCAATGGTATCGGATGGCTCGACCTCCAAGGTGATGGTCTTG 5792666
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTGCCT 45343
|| ||||||||||| || || |||||||| ||| ||
Sbjct 5792667 CCGGTCAGAGTCTTAACGAAAATTTGCATATTGGCT 5792702
Score = 131 bits (144), Expect = 1e-25
Identities = 155/210 (74%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||||||| ||| ||| |||| |||
Sbjct 5792259 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGTCCGTCCTCC 5792318
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||||||||| ||||| ||||| || || || || | ||||||||||||
Sbjct 5792319 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGATCTGGGGGGATTCCCTCCTTGTCCTGG 5792378
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | | || ||| ||||||| || || ||||||
Sbjct 5792379 ATCTTGGCCTTGACGTTCTCGATGGTATCGGATGGCTCAACCTCCAAAGTGATGGTCTTG 5792438
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337
|| |||||||||||||| ||||| ||||||
Sbjct 5792439 CCAGTCAGAGTCTTCACGAAGATCTGCATG 5792468
>seq4
Length=24153973
Score = 125 bits (138), Expect = 6e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || ||||||||| |||||||| ||| ||| ||| |||| |||
Sbjct 3789619 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCTTCC 3789678
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
||||| || |||||||| |||| ||||| || || || || | |||||||| ||| |
Sbjct 3789679 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATTCCCTCCTTATCCTGA 3789738
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | ||||| ||| ||||||| || || ||||||
Sbjct 3789739 ATCTTGGCCTTCACATTCTCAATGGTGTCCGATGGCTCAACCTCCAAAGTGATGGTCTTG 3789798
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || ||||||||||| ||||| |||||
Sbjct 3789799 CCAGTGAGAGTCTTCACGAAGATCTGCAT 3789827
>seq1
Length=23539531
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
||||||||||| || ||||||||| |||||||||||| ||| ||| | || |||
Sbjct 4075124 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGAGTGCGGCCATCCTCC 4075065
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| |||| ||||| || || || || | |||||||| |||
Sbjct 4075064 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCCTCCTTATCCTGG 4075005
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | |||| | ||||||||||| ||| || ||||||
Sbjct 4075004 ATCTTAGCCTTGACATTCTCGATGGTGTCAGAAGGCTCCACCTCCAAGGTGATGGTCTTG 4074945
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| || || || ||||| ||||| |||||
Sbjct 4074944 CCGGTGAGGGTTTTCACGAAGATCTGCAT 4074916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395038514674999
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |